PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | SMil_00006319-RA_Salv | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia
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Family | GRAS | ||||||||
Protein Properties | Length: 150aa MW: 16797 Da PI: 4.7941 | ||||||||
Description | GRAS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GRAS | 55.4 | 1.2e-17 | 34 | 127 | 199 | 290 |
GRAS 199 gEalaVnlvlqlhrlldesvsles..erdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerik 284 gEal++n++++lh+++ e+ + + r+ +Lk+v++l++k vvvv+++ad+ s++++ r+ a +y +d +e+ lp+es+++++ SMil_00006319-RA_Salv 34 GEALIINFQMMLHYIPGETRANAPnsLRTIFLKAVRGLNSKAVVVVDEDADLMSGNLMSRLRAAYNYLGIPYDRVETFLPPESRQQQW 121 9***************9987765445899*********************************************************** PP GRAS 285 vErell 290 ++++l SMil_00006319-RA_Salv 122 YDQALA 127 *99875 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50985 | 9.78 | 1 | 150 | IPR005202 | Transcription factor GRAS |
Pfam | PF03514 | 4.2E-15 | 34 | 127 | IPR005202 | Transcription factor GRAS |
Sequence ? help Back to Top |
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Protein Sequence Length: 150 aa Download sequence Send to blast |
MEFKEILSSS SEGFSSLIEQ LRAIGTGTGT GAGGEALIIN FQMMLHYIPG ETRANAPNSL 60 RTIFLKAVRG LNSKAVVVVD EDADLMSGNL MSRLRAAYNY LGIPYDRVET FLPPESRQQQ 120 WYDQALASIT TLNHQDWKDI EEERRLKEAN |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015063662.1 | 6e-40 | scarecrow-like protein 32 | ||||
TrEMBL | A0A022RWR1 | 2e-38 | A0A022RWR1_ERYGU; Uncharacterized protein (Fragment) | ||||
STRING | Migut.H00362.1.p | 2e-39 | (Erythranthe guttata) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G67411.1 | 7e-25 | GRAS family protein |