PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | AT5G67411.1 | ||||||||
Common Name | K8K14, SCL16 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
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Family | GRAS | ||||||||
Protein Properties | Length: 202aa MW: 23286.7 Da PI: 4.9338 | ||||||||
Description | GRAS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GRAS | 136.2 | 3.4e-42 | 1 | 200 | 123 | 312 |
GRAS 123 lQWpaLlqaLasRp..egppslRiTgvgspesg.....skeeleetgerLakfAeelgvpfefnvl...vakrledleleeLrvkp...gEalaVnlv 207 +Q p+L++++a++ ++pp l++T+++s +++ ++ee+g++L +fA++ +v +ef+++ +++ l++l +e+Lr++p +Eal+Vn++ AT5G67411.1 1 MQIPTLIDSMANKLhkKPPPLLKLTVIASDAEFhppplLGISYEELGSKLVNFATTRNVAMEFRIIsssYSDGLSSL-IEQLRIDPfvfNEALVVNCH 97 7**********988778899*********88889988888999**********************966555566666.9******************* PP GRAS 208 lqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgreivnvvacegaer 305 ++lh+++de ++++ r+ +Lk +++l+P++v+++++++d +s++F r+ + +y++ +d+ e+ l r se+r+++E+ ++++i nvva+egaer AT5G67411.1 98 MMLHYIPDEILTSNL-RSVFLKELRDLNPTIVTLIDEDSDFTSTNFISRLRSLYNYMWIPYDTAEMFLTRGSEQRQWYEAD-ISWKIDNVVAKEGAER 193 *******88777776.*****************************************************************.**************** PP GRAS 306 rerhetl 312 +er e + AT5G67411.1 194 VERLEPK 200 ***9976 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03514 | 1.2E-39 | 1 | 200 | IPR005202 | Transcription factor GRAS |
PROSITE profile | PS50985 | 22.526 | 1 | 202 | IPR005202 | Transcription factor GRAS |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003674 | Molecular Function | molecular_function |
Sequence ? help Back to Top |
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Protein Sequence Length: 202 aa Download sequence Send to blast |
MQIPTLIDSM ANKLHKKPPP LLKLTVIASD AEFHPPPLLG ISYEELGSKL VNFATTRNVA 60 MEFRIISSSY SDGLSSLIEQ LRIDPFVFNE ALVVNCHMML HYIPDEILTS NLRSVFLKEL 120 RDLNPTIVTL IDEDSDFTST NFISRLRSLY NYMWIPYDTA EMFLTRGSEQ RQWYEADISW 180 KIDNVVAKEG AERVERLEPK SR |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | |||||
Expression Atlas | AT5G67411 | |||||
AtGenExpress | AT5G67411 |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in seedlings, leaves and flowers. {ECO:0000269|PubMed:18500650}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor involved in plant development. {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | AT5G67411.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Phenotype -- Mutation ? help Back to Top | ||||||
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Source | ID | |||||
T-DNA Express | AT5G67411 |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | DQ487622 | 0.0 | DQ487622.1 Arabidopsis thaliana clone 0000003524_0000003052 unknown protein mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | NP_001032167.1 | 1e-148 | GRAS family transcription factor | ||||
Swissprot | Q2V2T9 | 1e-149 | SCL16_ARATH; Putative scarecrow-like protein 16 | ||||
TrEMBL | D7MUQ8 | 1e-127 | D7MUQ8_ARALL; Uncharacterized protein | ||||
STRING | AT5G67411.1 | 1e-148 | (Arabidopsis thaliana) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Representative plant | OGRP2499 | 15 | 34 |
Link Out ? help Back to Top | |
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Phytozome | AT5G67411.1 |
Entrez Gene | 3771574 |
iHOP | AT5G67411 |
wikigenes | AT5G67411 |
Publications ? help Back to Top | |||
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