PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | SMil_00006289-RA_Salv | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia
|
||||||||
Family | EIL | ||||||||
Protein Properties | Length: 557aa MW: 63101.4 Da PI: 6.2877 | ||||||||
Description | EIL family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | EIN3 | 152.8 | 4.4e-47 | 32 | 124 | 1 | 98 |
XXXXXXXXXXXXXXXXXXXXXXX..XXXXX.XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX CS EIN3 1 eelkkrmwkdqmllkrlkerkkqlledkeaatgakksnksneqarrkkmsraQDgiLkYMlkemevcnaqGfvYgiipekgkpvegas 88 +el++rmw+d+m+lkrlke++k ke ++a+k+++s+eqarrkkmsraQDgiLkYMlk+mevc+aqGfvYgiipekgkpv+gas SMil_00006289-RA_Salv 32 DELERRMWRDKMRLKRLKEMHKG----KEG-VDAAKQRQSQEQARRKKMSRAQDGILKYMLKMMEVCKAQGFVYGIIPEKGKPVSGAS 114 79******************998....787.9******************************************************** PP XXXXXXXXXX CS EIN3 89 dsLraWWkek 98 d+Lr+WWk+k SMil_00006289-RA_Salv 115 DNLREWWKDK 124 ********97 PP | |||||||
2 | EIN3 | 285.5 | 1.9e-87 | 125 | 366 | 138 | 353 |
TS-HHHHHHHHHHHSSSSSS-TTS--TTT--HHHH---S--HHHHHHT--TT--.-----GGG--HHHHHHHHHHHHHHTGGGHHHHH CS EIN3 138 elqDTtlgSLLsalmqhcdppqrrfplekgvepPWWPtGkelwwgelglskdqgtppykkphdlkkawkvsvLtavikhmsptieeir 225 elqDTtlgSLLsalmqhcdppqrrfplekgv+pPWWPtGke+ww++lgl+kdqg ppykkphdlkkawkv+vLtavikhmsp+i++ir SMil_00006289-RA_Salv 125 ELQDTTLGSLLSALMQHCDPPQRRFPLEKGVPPPWWPTGKEEWWHQLGLQKDQGSPPYKKPHDLKKAWKVGVLTAVIKHMSPDIAKIR 212 8*************************************************************************************** PP HTTTTSSSSTTT--SHHHHHHHHHHTTTTT-S--XXXX..XX.XXXXXXXXXXX.XXXXXXXXX.XXXXXX.XXXXXXXXXX...... CS EIN3 226 elerqskylqdkmsakesfallsvlnqeekecatvsah..ss.slrkqspkvtl.sceqkedve.gkkeskikhvqavktta...... 302 +l+rqsk+lqdkm+akes+++l+++nqee+++++++++ ++ s +s + l ++++++dv+ g++es+ +vq++k ++ SMil_00006289-RA_Salv 213 KLVRQSKCLQDKMTAKESATWLAIINQEEALARELYPDrcPPlSGCGGSGTFALnESSSEYDVDvGDEESN-FDVQEQKPATlgllni 299 **************************************85334444477777661567899***5555555.99*****999****** PP ..................XXXXXXXXXXXXXXXXXXXXX......XXXXXXX.XXXXXXXXXXXXXXXX CS EIN3 303 ..................gfpvvrkrkkkpsesakvsskevsrtcqssqfrgsetelifadknsisqne 353 ++++ rkrk + e ++++ + ++tc+ q+++ e +++f+d+ s+++++ SMil_00006289-RA_Salv 300 gmdrfqdrshaikdelitSLDFSRKRK-PGCELNMMM-DGKIYTCEFLQCPHAELRHGFHDRASRDNHQ 366 ****************99999999998.555555555.4557*************************98 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF04873 | 1.0E-42 | 32 | 124 | No hit | No description |
Gene3D | G3DSA:1.10.3180.10 | 7.0E-72 | 124 | 251 | IPR023278 | Ethylene insensitive 3-like protein, DNA-binding domain |
Pfam | PF04873 | 1.1E-65 | 124 | 241 | No hit | No description |
SuperFamily | SSF116768 | 3.79E-60 | 125 | 244 | IPR023278 | Ethylene insensitive 3-like protein, DNA-binding domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0001666 | Biological Process | response to hypoxia | ||||
GO:0009873 | Biological Process | ethylene-activated signaling pathway | ||||
GO:0042742 | Biological Process | defense response to bacterium | ||||
GO:0071281 | Biological Process | cellular response to iron ion | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0000976 | Molecular Function | transcription regulatory region sequence-specific DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 557 aa Download sequence Send to blast |
MKEADVCALQ SAEAEADAVV EDDYTDDEID VDELERRMWR DKMRLKRLKE MHKGKEGVDA 60 AKQRQSQEQA RRKKMSRAQD GILKYMLKMM EVCKAQGFVY GIIPEKGKPV SGASDNLREW 120 WKDKELQDTT LGSLLSALMQ HCDPPQRRFP LEKGVPPPWW PTGKEEWWHQ LGLQKDQGSP 180 PYKKPHDLKK AWKVGVLTAV IKHMSPDIAK IRKLVRQSKC LQDKMTAKES ATWLAIINQE 240 EALARELYPD RCPPLSGCGG SGTFALNESS SEYDVDVGDE ESNFDVQEQK PATLGLLNIG 300 MDRFQDRSHA IKDELITSLD FSRKRKPGCE LNMMMDGKIY TCEFLQCPHA ELRHGFHDRA 360 SRDNHQLSCP YKHSPQFGVS NFSINDIKPV IFPQSFVQQK PSPLPVNQTP APPFDLSGLG 420 VPEDGQRMIN ELMSCYDNNV LGNKNANAGS ATAASKEQQR NNVHCQQDSG YLQTQGMVLD 480 NGLFEDNNSN IHHNPMMFRA AADRFDQCKV LNSPFNPNPS ENFQLMFSSP FNIPAADFSE 540 NFGPRDSLAK QDVAMWY |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4zds_A | 2e-78 | 124 | 250 | 7 | 133 | Protein ETHYLENE INSENSITIVE 3 |
4zds_B | 2e-78 | 124 | 250 | 7 | 133 | Protein ETHYLENE INSENSITIVE 3 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Probable transcription factor acting as a positive regulator in the ethylene response pathway. Is required for ethylene responsiveness in adult plant tissues. Binds a primary ethylene response element present in the ETHYLENE-RESPONSE-FACTOR1 promoter with consequence to activate the transcription of this gene. {ECO:0000269|PubMed:9215635, ECO:0000269|PubMed:9851977}. |
Binding Motif ? help Back to Top | |||
---|---|---|---|
Motif ID | Method | Source | Motif file |
MP00367 | DAP | Transfer from AT3G20770 | Download |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_011080514.1 | 0.0 | protein ETHYLENE INSENSITIVE 3 | ||||
Swissprot | O24606 | 0.0 | EIN3_ARATH; Protein ETHYLENE INSENSITIVE 3 | ||||
TrEMBL | A0A4D9BMJ0 | 0.0 | A0A4D9BMJ0_SALSN; Ethylene-insensitive protein 3 | ||||
STRING | XP_009801714.1 | 0.0 | (Nicotiana sylvestris) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA304 | 23 | 178 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT3G20770.1 | 0.0 | EIL family protein |