PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

SMil_00006256-RA_Salv

Organism

Salvia miltiorrhiza

Taxonomic ID

226208

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia

Family

SRS

Protein Properties

Length: 325aa MW: 35560.5 Da PI: 7.7342

Description

SRS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
SMil_00006256-RA_Salv	genome	NDCTCM	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF702	223.5	4.3e-69	113	261	3	154
DUF702 3 sgtasCqdCGnqakkdCaheRCRtCCksrgfdCathvkstWvpaakrrerqqqlaaasskaaasaaeaaskrkrelkskkqsalsstk 90 g++sCqdCGnqakkdC+h+RCRtCCksrgf+C+thvkstWvpa+krrerqqqla+++++++ ++e + + ++++ ++ + l +t+ SMil_00006256-RA_Salv 113 GGGISCQDCGNQAKKDCTHMRCRTCCKSRGFQCQTHVKSTWVPASKRRERQQQLASLQRRDTPPTRERERETSKRH-RESPNPLVCTR 199 5789***************************************************9988766644444444433.466888999 PP DUF702 91 lssaeskkeletsslPeevsseavfrcvrvssvddgeeelaYqtavsigGhvfkGiLydqGlee 154 +++++s le+ ++P+evs+eavfrcvrvs +d++ee+laYqtav+i+GhvfkGiLydqG e+ SMil_00006256-RA_Salv 200 IPTTTSG--LEMGNFPSEVSAEAVFRCVRVSPMDEAEEQLAYQTAVNISGHVFKGILYDQGSEA 261 9999866..78889***********************************************986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF05142	3.5E-65	115	260	IPR007818	Protein of unknown function DUF702
TIGRFAMs	TIGR01623	1.9E-27	117	159	IPR006510	Zinc finger, lateral root primordium type 1
TIGRFAMs	TIGR01624	3.6E-25	212	258	IPR006511	Lateral Root Primordium type 1, C-terminal

Sequence ? help Back to Top
Protein Sequence Length: 325 aa Download sequence Send to blast
MAGFFSLGSG AGRPSGANNP DQESTSHNHN HNPPSDLNPE SWFLFRNEEI SYKGFELWQP 60 QPQPHQHQQA ENFLQPRNPL QDLYASAGGP SRLSIGDDQS PRSGFLMMRS SGGGGISCQD 120 CGNQAKKDCT HMRCRTCCKS RGFQCQTHVK STWVPASKRR ERQQQLASLQ RRDTPPTRER 180 ERETSKRHRE SPNPLVCTRI PTTTSGLEMG NFPSEVSAEA VFRCVRVSPM DEAEEQLAYQ 240 TAVNISGHVF KGILYDQGSE AQYMPGETSS GGGSVSAGAA QHLNLITGAP ATATTSAAPP 300 FLDTCLFPPP IHFVAGTQFF PPPRS

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator involved in the transcriptional regulation of terpene biosynthesis in glandular trichomes (PubMed:24884371, PubMed:24142382). Binds to the promoter of the linalool synthase TPS5 and promotes TPS5 gene transactivation (PubMed:24884371, PubMed:24142382). Acts synergistically with MYC1 in the transactivation of TPS5 (PubMed:24884371). {ECO:0000269\|PubMed:24142382, ECO:0000269\|PubMed:24884371}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011100954.1	1e-139	protein SHORT INTERNODES
Swissprot	K4B6C9	2e-97	EOT1_SOLLC; Protein EXPRESSION OF TERPENOIDS 1
TrEMBL	A0A4D9AL91	1e-142	A0A4D9AL91_SALSN; Uncharacterized protein
STRING	Migut.L00031.1.p	1e-110	(Erythranthe guttata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA678	24	110

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G66350.1	1e-69	Lateral root primordium (LRP) protein-related

Publications ? help Back to Top
Tomato Genome Consortium The tomato genome sequence provides insights into fleshy fruit evolution. Nature, 2012. 485(7400): p. 635-41 [PMID:22660326] Spyropoulou EA,Haring MA,Schuurink RC RNA sequencing on Solanum lycopersicum trichomes identifies transcription factors that activate terpene synthase promoters. BMC Genomics, 2014. 15: p. 402 [PMID:24884371]