PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SMil_00006089-RA_Salv
Common NameWRKY23
Organism
Salvia miltiorrhiza
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia
Family WRKY
Protein Properties Length: 341aa    MW: 37952.9 Da    PI: 10.0422
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SMil_00006089-RA_SalvgenomeNDCTCMView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY1001.5e-31275332359
                            -SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
                   WRKY   3 DgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                            D+y+WrKYGqK++kgs++pr+YY+C+s  gCp++k+ver+ ed +++++tYegeHnh+
  SMil_00006089-RA_Salv 275 DEYSWRKYGQKPIKGSPHPRGYYKCSSMrGCPARKHVERCLEDSSMLIVTYEGEHNHP 332
                            9************************9988****************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF105331.6E-15226271IPR018872Zn-cluster domain
Gene3DG3DSA:2.20.25.805.4E-34261333IPR003657WRKY domain
PROSITE profilePS5081130.136268334IPR003657WRKY domain
SuperFamilySSF1182903.79E-27271332IPR003657WRKY domain
SMARTSM007748.0E-39273333IPR003657WRKY domain
PfamPF031062.7E-27275332IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 341 aa     Download sequence    Send to blast
MEEVERANSA AVESCYRVIH LLSQPQIQNH YRNLSDQTGD AVNKFKKVVS LLNSSSGHAR  60
VRKFKKIQPP LPQNILLENP MTRTEDQHPK PLSLIQINPL ESNPLQEHGS TIKSALTLAS  120
PSLELNSLAK NLPQFAQQAA DYHLLQQQKQ RRIQLQQQQQ AEVMYRCNSS GISLNFDGST  180
CTPTMSSSRS FISSLSVDAS VANMDGSAFH LIGSSRSADQ GSYHHKRRCS GRGDDGSVKC  240
GGSGRCRCSK KRKNKIKRSI KVPAISTKLA DIPPDEYSWR KYGQKPIKGS PHPRGYYKCS  300
SMRGCPARKH VERCLEDSSM LIVTYEGEHN HPNLPSQSAN T
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ayd_A3e-212693351075WRKY transcription factor 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By salicylic acid. {ECO:0000269|PubMed:11449049}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKM8231460.0KM823146.1 Salvia miltiorrhiza WRKY protein (WRKY23) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011080000.11e-180probable WRKY transcription factor 21 isoform X1
SwissprotO043361e-112WRK21_ARATH; Probable WRKY transcription factor 21
TrEMBLA0A0D5Y9950.0A0A0D5Y995_SALMI; WRKY protein
STRINGXP_009618397.11e-161(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA32712350
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G04670.17e-75WRKY DNA-binding protein 39