PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | SMil_00005106-RA_Salv | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia
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Family | ERF | ||||||||
Protein Properties | Length: 211aa MW: 23817.6 Da PI: 5.7753 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 64.5 | 2.2e-20 | 95 | 145 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 +y+GVr+++ +g+++AeIrdp+ +g r++lg+f+ta eAa+a+++a+ +++g SMil_00005106-RA_Salv 95 HYRGVRRRP-WGKYAAEIRDPKRRG--SRVWLGTFDTAAEAARAYDRAAFRMRG 145 69*******.**********96554..*************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00018 | 9.06E-28 | 94 | 153 | No hit | No description |
SuperFamily | SSF54171 | 1.18E-23 | 95 | 155 | IPR016177 | DNA-binding domain |
Pfam | PF00847 | 5.9E-15 | 95 | 145 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 1.7E-37 | 95 | 159 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 5.7E-33 | 95 | 154 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 24.684 | 95 | 153 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 3.9E-11 | 96 | 107 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 3.9E-11 | 119 | 135 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009409 | Biological Process | response to cold | ||||
GO:0010200 | Biological Process | response to chitin | ||||
GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 211 aa Download sequence Send to blast |
MAFCDEVSAI ERIRMHLLGE FEFELEFESS ASSSSSSESG SPDSELFAAQ YVFDFDRNQK 60 LGSPPPAAKR LEWIEFGSGN SSDDGAAAVA EEQQHYRGVR RRPWGKYAAE IRDPKRRGSR 120 VWLGTFDTAA EAARAYDRAA FRMRGSKAIL NFPLEIQRER EAAAAGAGGK RRREEELELR 180 QQKMVKCETA EWEWAAPLIT PLCWHLPTHT S |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2gcc_A | 4e-30 | 94 | 157 | 4 | 67 | ATERF1 |
3gcc_A | 4e-30 | 94 | 157 | 4 | 67 | ATERF1 |
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Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00549 | DAP | Transfer from AT5G47230 | Download |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_012827321.1 | 2e-59 | PREDICTED: ethylene-responsive transcription factor 6-like | ||||
TrEMBL | A0A411DXJ4 | 1e-105 | A0A411DXJ4_SALMI; AP2/ERF transcription factor | ||||
STRING | Migut.A01161.1.p | 8e-59 | (Erythranthe guttata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA963 | 23 | 89 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G17490.1 | 3e-28 | ethylene responsive element binding factor 6 |