PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SMil_00004725-RA_Salv
Organism
Salvia miltiorrhiza
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia
Family MYB_related
Protein Properties Length: 290aa    MW: 31998.8 Da    PI: 5.0551
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SMil_00004725-RA_SalvgenomeNDCTCMView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding29.71.5e-091444131
                           TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHH CS
        Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartm 31
                           rg+WT+eEd +++ +v+ +G g+W++++++ 
  SMil_00004725-RA_Salv 14 RGPWTPEEDAKILAYVASHGIGNWTLVPQKA 44
                           89*************************9976 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.601.3E-20544IPR009057Homeodomain-like
SuperFamilySSF466891.94E-8845IPR009057Homeodomain-like
PROSITE profilePS5129412.6939106IPR017930Myb domain
SMARTSM007172.6E-813104IPR001005SANT/Myb domain
PfamPF002493.0E-71443IPR001005SANT/Myb domain
CDDcd001671.23E-51699No hitNo description
Gene3DG3DSA:1.10.10.601.3E-2085110IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 290 aa     Download sequence    Send to blast
MGRPPCCDKA NVKRGPWTPE EDAKILAYVA SHGIGNWTLV PQKADVARAA DLDGLTISAP  60
ISNTTASPPK RKTAFLKCTR HWQQAAAGRT DNDVKNYWNT KLKKKLTKMG IDPITHKPFS  120
QLFSEYGRIS GSPITRNRNP FLQTQTGRWV QGNNEPQKID HFTSYDVVFA QENVVQPCVF  180
NEASSSASAS AAALFSSSFS CEASRAPTVP ASPFSCNEEY IVECKNVEML GLGLGNEGVA  240
LQEDGNLVSE NEVCVDKSES AADTFVEDML ARDMEIRLQF PEIFDENYDY
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKF0594280.0KF059428.1 Salvia miltiorrhiza MYB-related transcription factor (MYB74) mRNA, complete cds.
GenBankKF0595380.0KF059538.1 Salvia miltiorrhiza MYB-related transcription factor (MYB74) gene, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011098554.13e-73transcription factor MYB35 isoform X2
TrEMBLA0A059PRF21e-159A0A059PRF2_SALMI; MYB-related transcription factor
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA2044122
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G28470.15e-41MYB family protein