PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SMil_00004668-RA_Salv
Organism
Salvia miltiorrhiza
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia
Family C3H
Protein Properties Length: 366aa    MW: 39978 Da    PI: 6.666
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SMil_00004668-RA_SalvgenomeNDCTCMView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH26.79.8e-09114138126
                            --S---SGGGGTS--TTTTT-SS-SS CS
                zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHg 26 
                            ykt+lC+ f++ GtC+y  +C+FaH+
  SMil_00004668-RA_Salv 114 YKTKLCCKFRA-GTCPYITNCNFAHS 138
                            9**********.*************8 PP
2zf-CCCH17.38.4e-06185210126
                            --S---SGGGGTS--TTTTT-SS-SS CS
                zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHg 26 
                            yk + C+ f+    C+yG++C+F H+
  SMil_00004668-RA_Salv 185 YKGRHCKKFYTEEGCPYGENCTFLHD 210
                            78888********************7 PP
3zf-CCCH42.21.3e-13255280126
                            --S---SGGGGTS--TTTTT-SS-SS CS
                zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHg 26 
                            +kt++C+ +  tG+C++G++C+FaHg
  SMil_00004668-RA_Salv 255 WKTRICNKWELTGYCPFGSKCHFAHG 280
                            8************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF902293.92E-8110144IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.106.1E-15111146IPR000571Zinc finger, CCCH-type
SMARTSM003566.1E-4113139IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010312.972113140IPR000571Zinc finger, CCCH-type
PfamPF006425.9E-6114138IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.106.4E-9182212IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.09E-7183212IPR000571Zinc finger, CCCH-type
SMARTSM003560.17184211IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.986184212IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.107.0E-17250284IPR000571Zinc finger, CCCH-type
SuperFamilySSF902298.24E-10251285IPR000571Zinc finger, CCCH-type
SMARTSM003565.2E-9254281IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.422254282IPR000571Zinc finger, CCCH-type
PfamPF006426.7E-11255280IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 366 aa     Download sequence    Send to blast
LLWGEGEFLI LIFLKMDYRR ENRLSSGDVV HVLSGSSRNP VNESWEPGFV DQAVWATEDD  60
YGMWNGEGSF DTNSNSSYDG ARSGSEPPNK RSRGSNSGDG AASNRSKAIG KMFYKTKLCC  120
KFRAGTCPYI TNCNFAHSVE ELRKPPDNWQ EIVAAHEEER ASSSEPREEF QIPIVGVSDE  180
TQRSYKGRHC KKFYTEEGCP YGENCTFLHD EQSKARESVA ISLGPGSGNG NGNGNGGGSG  240
YGASASGPTL KPSNWKTRIC NKWELTGYCP FGSKCHFAHG AAELHNYGGG ATDSEAKDPS  300
TPDAKQPVRT SVDSGVAALP HAEGYHMGIP PQRLSNAIQR TGTRPNQKWK GPDKISKIYG  360
DWIDDL
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011092357.10.0zinc finger CCCH domain-containing protein 12 isoform X2
SwissprotQ84UQ31e-122C3H56_ORYSJ; Zinc finger CCCH domain-containing protein 56
TrEMBLA0A4D9B0540.0A0A4D9B054_SALSN; Uncharacterized protein
STRINGMigut.N01445.1.p1e-175(Erythranthe guttata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA37292343
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G32360.11e-114C3H family protein