PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | SMil_00003984-RA_Salv | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia
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Family | bHLH | ||||||||
Protein Properties | Length: 228aa MW: 25858.4 Da PI: 7.5461 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 30 | 9.6e-10 | 61 | 112 | 1 | 54 |
CHHHHHHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHH CS HLH 1 rrrahnerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksL 54 +++ah E++RR+++ + ++ Lr+llP ++K ++ +A +YI+++ SMil_00003984-RA_Salv 61 KKTAHRFTEKQRRQEMTTLYASLRSLLPLeY---IKGKRAVSDHMDQAANYINDM 112 799**************************77...999***************987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF47459 | 1.7E-12 | 57 | 128 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
PROSITE profile | PS50888 | 12.087 | 60 | 112 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 5.88E-8 | 60 | 117 | No hit | No description |
Pfam | PF00010 | 8.4E-7 | 61 | 112 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 6.4E-9 | 61 | 128 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 228 aa Download sequence Send to blast |
MFPISSDGVI EDPWIFLEQD GFLLADIPIL EGNEHPQNSV KKRPRKAPTS AGVEENSSDS 60 KKTAHRFTEK QRRQEMTTLY ASLRSLLPLE YIKGKRAVSD HMDQAANYIN DMKKKIEEMK 120 RRRESLRNVA GTAAEAQNQT SNATDYCVKI NVFTDGVEIL ISSSLNKDCF PLSMVLSDLL 180 NRQLHVINCV STRGQRCYLH KIHIQLNNST SIDVAELQER LVDLLQLA |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KP257463 | 0.0 | KP257463.1 Salvia miltiorrhiza clone 30 basic helix-loop-helix transcription factor mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011076269.1 | 1e-77 | transcription factor bHLH36-like | ||||
TrEMBL | A0A0H3Y8T5 | 1e-170 | A0A0H3Y8T5_SALMI; Basic helix-loop-helix transcription factor | ||||
STRING | Migut.F01201.1.p | 1e-48 | (Erythranthe guttata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA598 | 24 | 109 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G25410.1 | 5e-28 | bHLH family protein |