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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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| Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
| Basic Information? help Back to Top | |||||||||
|---|---|---|---|---|---|---|---|---|---|
| TF ID | SMil_00003923-RA_Salv | ||||||||
| Organism | |||||||||
| Taxonomic ID | |||||||||
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia
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| Family | ARF | ||||||||
| Protein Properties | Length: 1062aa MW: 117688 Da PI: 5.9219 | ||||||||
| Description | ARF family protein | ||||||||
| Gene Model |
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| Signature Domain? help Back to Top | |||||||
|---|---|---|---|---|---|---|---|
| No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
| 1 | B3 | 76.2 | 3.7e-24 | 155 | 256 | 1 | 99 |
EEEE-..-HHHHTT-EE--HHH.HTT......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEE CS
B3 1 ffkvltpsdvlksgrlvlpkkfaeeh......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvF 82
f+k+lt sd++++g +++p++ ae+ ++++++ ++l+++d++ ++W++++iyr++++r++lt+GW+ Fv a++L++gD v+F
SMil_00003923-RA_Salv 155 FCKTLTASDTSTHGGFSVPRRAAEKLfpqldySMQPPT-QELVVRDLHDNTWTFRHIYRGQPKRHLLTTGWSMFVGAKRLRAGDAVLF 241
99*********************999*****9555554.49*********************************************** PP
EE-SSSEE..EEEEE-S CS
B3 83 kldgrsefelvvkvfrk 99
++++ +l+++v+r+
SMil_00003923-RA_Salv 242 I--RDEKSQLLLGVRRA 256
*..45677789999997 PP
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| 2 | Auxin_resp | 115.6 | 4.3e-38 | 281 | 364 | 1 | 83 |
Auxin_resp 1 aahaastksvFevvYnPrastseFvvkvekvekalk.vkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83
aahaa+++s+F+++YnPra++seFv++++k++ka++ +++s+GmRf ++fete+s +rr++Gt++g+sd+dp+rWpnSkWrsL+
SMil_00003923-RA_Salv 281 AAHAAANRSPFTIFYNPRACPSEFVIPLAKYRKAVYgTQLSIGMRFGIMFETEESTKRRYMGTIIGISDIDPLRWPNSKWRSLQ 364
79**********************************9*********************************************97 PP
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| Protein Features ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Database | Entry ID | E-value | Start | End | InterPro ID | Description |
| SuperFamily | SSF101936 | 1.7E-47 | 142 | 284 | IPR015300 | DNA-binding pseudobarrel domain |
| Gene3D | G3DSA:2.40.330.10 | 9.3E-42 | 148 | 269 | IPR015300 | DNA-binding pseudobarrel domain |
| CDD | cd10017 | 8.54E-22 | 154 | 255 | No hit | No description |
| PROSITE profile | PS50863 | 13.155 | 155 | 257 | IPR003340 | B3 DNA binding domain |
| SMART | SM01019 | 8.9E-23 | 155 | 257 | IPR003340 | B3 DNA binding domain |
| Pfam | PF02362 | 1.5E-21 | 155 | 256 | IPR003340 | B3 DNA binding domain |
| Pfam | PF06507 | 3.6E-33 | 281 | 364 | IPR010525 | Auxin response factor |
| Pfam | PF02309 | 2.2E-8 | 818 | 907 | IPR033389 | AUX/IAA domain |
| PROSITE profile | PS51745 | 25.528 | 821 | 904 | IPR000270 | PB1 domain |
| SuperFamily | SSF54277 | 2.94E-8 | 834 | 899 | No hit | No description |
| Gene Ontology ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| GO Term | GO Category | GO Description | ||||
| GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
| GO:0009733 | Biological Process | response to auxin | ||||
| GO:0009908 | Biological Process | flower development | ||||
| GO:0009942 | Biological Process | longitudinal axis specification | ||||
| GO:0010305 | Biological Process | leaf vascular tissue pattern formation | ||||
| GO:0048364 | Biological Process | root development | ||||
| GO:0048507 | Biological Process | meristem development | ||||
| GO:0005634 | Cellular Component | nucleus | ||||
| GO:0016020 | Cellular Component | membrane | ||||
| GO:0042802 | Molecular Function | identical protein binding | ||||
| GO:0044212 | Molecular Function | transcription regulatory region DNA binding | ||||
| Sequence ? help Back to Top |
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| Protein Sequence Length: 1062 aa Download sequence Send to blast |
LREGERKGEM ASVEEKLKPG GLVSGGSNLI DGMKLLKEMQ DHTGVKKAIN SELWHACAGP 60 LVTLPQVGSL VYYFPQGHSE QVAVSTNRSA TTQIPNYPNL PTQLLCQVHN VTLHADKETD 120 EIYAQMSLQC VNTEKDVFPI PDFGLKPSKH PTEFFCKTLT ASDTSTHGGF SVPRRAAEKL 180 FPQLDYSMQP PTQELVVRDL HDNTWTFRHI YRGQPKRHLL TTGWSMFVGA KRLRAGDAVL 240 FIRDEKSQLL LGVRRANRQQ TTLPSSVLSA DSMHIGILAA AAHAAANRSP FTIFYNPRAC 300 PSEFVIPLAK YRKAVYGTQL SIGMRFGIMF ETEESTKRRY MGTIIGISDI DPLRWPNSKW 360 RSLQVEWDEP GCGDKQNRVS PWEIETPESL FIFPSLTANL KRPFHSAFIG APPEWDSLMN 420 RPFLRVPDNP HGEFQCPSIS SMWSEQLLKM LAKPHGMMMT PHSMQEMKDV ALQEPRSLMQ 480 PAIKQKPEMM VPQDVCLQSE THSQSFIGQP YITNPSISPA GKPNISRNLT SPAAGHELSK 540 LDSVPAENQS GQCRSEGQLS EEKLSGKPVN PQSLNNDFVV TSQIGGSVPF QTSPCGTQSR 600 LETHSPVDPS QVESANATNA MLQYTNQVDF SPYHMMCPSP SGSFRNTGSL SMFKKPDQSP 660 LSSEVVYPML PSVGQELWDD GPKCAGNLPV LLPHHDMSNL VLKDLSDENH NQSDIYSCLN 720 LDGSNSGSTV VDPCVSSSIL DDFSALKNMD FPNPSDYMVG GFCSTQDVQS QITSASLADS 780 QTFSIQEYAD NSGGASSSNV DFDDNNLLQQ SSFQQVTPRF RTYTKIQKAG SVGRSIDVSS 840 FKTYKQLRSE IERMFGLEGL LNDPGSGWKL VYVDFESDVL LVGDDPWEEF VGCVRCIRIL 900 SPSEVKQMGE EGMQLLNSAM QNSPIINDTV VALERDPTLD KRGGVLHEGN KELSALGPDN 960 IASRISQLEE QVSQWMKMLS DKTTKRGRGR PKGTGKGMGS EPMQAVPEGS IKGHLRNAGE 1020 MGYKPRDFVV DCSNSDSMRA MNNIVHRRWS DEMDDYPDLW DC |
| 3D Structure ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
| 4ldu_A | 0.0 | 8 | 389 | 3 | 392 | Auxin response factor 5 |
| Search in ModeBase | ||||||
| Functional Description ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Source | Description | |||||
| UniProt | Auxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs). Seems to act as transcriptional activator. Formation of heterodimers with Aux/IAA proteins may alter their ability to modulate early auxin response genes expression. Mediates embryo axis formation and vascular tissues differentiation. Functionally redundant with ARF7. May be necessary to counteract AMP1 activity. {ECO:0000269|PubMed:12036261, ECO:0000269|PubMed:14973283, ECO:0000269|PubMed:17553903}. | |||||
| Binding Motif ? help Back to Top | |||
|---|---|---|---|
| Motif ID | Method | Source | Motif file |
| MP00153 | DAP | Transfer from AT1G19850 | Download |
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| Annotation -- Nucleotide ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Source | Hit ID | E-value | Description | |||
| GenBank | KX036726 | 0.0 | KX036726.1 Salvia miltiorrhiza auxin response factor ARF6 (ARF) gene, complete cds. | |||
| Annotation -- Protein ? help Back to Top | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-value | Description | ||||
| Refseq | XP_011083507.1 | 0.0 | auxin response factor 5 | ||||
| Swissprot | P93024 | 0.0 | ARFE_ARATH; Auxin response factor 5 | ||||
| TrEMBL | A0A191T8S8 | 0.0 | A0A191T8S8_SALMI; Auxin response factor | ||||
| STRING | XP_009778804.1 | 0.0 | (Nicotiana sylvestris) | ||||
| Orthologous Group ? help Back to Top | |||
|---|---|---|---|
| Lineage | Orthologous Group ID | Taxa Number | Gene Number |
| Asterids | OGEA5859 | 23 | 34 |
| Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Hit ID | E-value | Description | ||||
| AT1G19850.1 | 0.0 | ARF family protein | ||||
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for Bioinformatics, Peking University Last Modified: 2022-12-08 Questions or Comments, please contact  |
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