PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | SMil_00003557-RA_Salv | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia
|
||||||||
Family | SRS | ||||||||
Protein Properties | Length: 198aa MW: 21584.8 Da PI: 8.1051 | ||||||||
Description | SRS family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF702 | 167.2 | 8.9e-52 | 4 | 141 | 3 | 153 |
DUF702 3 sgtasCqdCGnqakkdCaheRCRtCCksrgfdCathvkstWvpaakrrerqqqlaaasskaaasaaeaaskrkrelkskkqsalsstk 90 s +++CqdCGnqakkdC+h+RCRtCCksrg++C thvkstWvp+a+rr r++ +++ ++ +a+ ++ + + ++ SMil_00003557-RA_Salv 4 SSSSRCQDCGNQAKKDCEHSRCRTCCKSRGLQCPTHVKSTWVPVAQRRPRHNVMQQHHQISATVEQLYH-------------GPNPKR 78 56789********************************************97665554333322222222.............222223 PP DUF702 91 lssaeskkeletsslPeevsseavfrcvrvssvddgeeelaYqtavsigGhvfkGiLydqGle 153 ++ + le ++P ev +a+frcvrvssvd+ + +aYqt+v+i+Gh+f G+LydqG++ SMil_00003557-RA_Salv 79 YRENRAALGLEEGDFPGEVCFPAIFRCVRVSSVDNVVDSYAYQTSVNISGHLFTGFLYDQGPS 141 33444566788889***********************************************97 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF05142 | 1.6E-54 | 6 | 141 | IPR007818 | Protein of unknown function DUF702 |
TIGRFAMs | TIGR01623 | 3.6E-26 | 9 | 50 | IPR006510 | Zinc finger, lateral root primordium type 1 |
TIGRFAMs | TIGR01624 | 6.9E-23 | 93 | 140 | IPR006511 | Lateral Root Primordium type 1, C-terminal |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 198 aa Download sequence Send to blast |
SSSSSSSRCQ DCGNQAKKDC EHSRCRTCCK SRGLQCPTHV KSTWVPVAQR RPRHNVMQQH 60 HQISATVEQL YHGPNPKRYR ENRAALGLEE GDFPGEVCFP AIFRCVRVSS VDNVVDSYAY 120 QTSVNISGHL FTGFLYDQGP SEPEGTGNYV TGGSSSAAIG FLQQPHFLNS TSAAATGTTP 180 SPYPSSFCAF TSTSSQFF |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Transcription activator that binds DNA on 5'-ACTCTAC-3' and promotes auxin homeostasis-regulating gene expression (e.g. YUC genes), as well as genes affecting stamen development, cell expansion and timing of flowering. Synergistically with other SHI-related proteins, regulates gynoecium, stamen and leaf development in a dose-dependent manner, controlling apical-basal patterning. Promotes style and stigma formation, and influences vascular development during gynoecium development. May also have a role in the formation and/or maintenance of the shoot apical meristem (SAM). Suppressor of the gibberellin (GA) signal transduction. {ECO:0000269|PubMed:10368174, ECO:0000269|PubMed:11706176, ECO:0000269|PubMed:16740146}. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_011092834.1 | 4e-77 | protein SHI RELATED SEQUENCE 3-like | ||||
Swissprot | Q9XGX0 | 6e-49 | SHI_ARATH; Protein SHORT INTERNODES | ||||
TrEMBL | A0A4D8YQ67 | 1e-129 | A0A4D8YQ67_SALSN; Uncharacterized protein | ||||
STRING | XP_009785993.1 | 1e-67 | (Nicotiana sylvestris) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA4156 | 24 | 45 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT5G66350.1 | 2e-44 | Lateral root primordium (LRP) protein-related |
Publications ? help Back to Top | |||
---|---|---|---|
|