PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SMil_00003197-RA_Salv
Organism
Salvia miltiorrhiza
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia
Family C3H
Protein Properties Length: 407aa    MW: 44993.8 Da    PI: 8.6919
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SMil_00003197-RA_SalvgenomeNDCTCMView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH35.12.2e-114065227
                           -S---SGGGGTS--TTTTT-SS-SSS CS
                zf-CCCH  2 ktelCrffartGtCkyGdrCkFaHgp 27
                           +++ C+++ rtG C++G++C+F+H+p
  SMil_00003197-RA_Salv 40 GEPDCSYYIRTGVCRFGPTCRFNHPP 65
                           6899********************97 PP
2zf-CCCH391.4e-1286110327
                            S---SGGGGTS--TTTTT-SS-SSS CS
                zf-CCCH   3 telCrffartGtCkyGdrCkFaHgp 27 
                            +++C+++++tGtCk+G++CkF+H++
  SMil_00003197-RA_Salv  86 QPECQYYLKTGTCKFGATCKFHHPR 110
                            799********************96 PP
3zf-CCCH30.36.9e-10134156527
                            --SGGGGTS--TTTTT-SS-SSS CS
                zf-CCCH   5 lCrffartGtCkyGdrCkFaHgp 27 
                            +C ++ r+G+Ck+G++CkF+H++
  SMil_00003197-RA_Salv 134 ECAYYIRNGQCKFGSTCKFHHPQ 156
                            6********************97 PP
4zf-CCCH39.11.3e-12268294127
                            --S---SGGGGTS--TTTTT-SS-SSS CS
                zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHgp 27 
                            +++++C+f+++tG Ck+G+ CkF+H++
  SMil_00003197-RA_Salv 268 PGQPECQFYMKTGDCKFGAVCKFHHPK 294
                            5789*********************96 PP
5zf-CCCH38.22.4e-12314340127
                            --S---SGGGGTS--TTTTT-SS-SSS CS
                zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHgp 27 
                            ++++lC f++r+G+Ck+G++CkF H++
  SMil_00003197-RA_Salv 314 PGEPLCVFYSRYGICKFGPSCKFDHPM 340
                            589**********************95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003561.7E-53865IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.4933866IPR000571Zinc finger, CCCH-type
PfamPF006425.9E-84065IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.09E-54366IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.103.8E-44464IPR000571Zinc finger, CCCH-type
SMARTSM003565.0E-683110IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.15983111IPR000571Zinc finger, CCCH-type
PfamPF006425.7E-1086110IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.57E-687112IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.106.1E-589110IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.727129157IPR000571Zinc finger, CCCH-type
SMARTSM003560.001129156IPR000571Zinc finger, CCCH-type
SuperFamilySSF902293.53E-6130157IPR000571Zinc finger, CCCH-type
PfamPF006427.3E-7134156IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.109.7E-4135155IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.483267295IPR000571Zinc finger, CCCH-type
SMARTSM003565.2E-6267294IPR000571Zinc finger, CCCH-type
PfamPF006423.2E-9269294IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.05E-5271297IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.103.7E-5273295IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.234313341IPR000571Zinc finger, CCCH-type
SMARTSM003561.4E-7313340IPR000571Zinc finger, CCCH-type
PfamPF006424.3E-9315340IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.7E-5316340IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.106.2E-4318338IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0017148Biological Processnegative regulation of translation
GO:0005829Cellular Componentcytosol
GO:0010313Molecular Functionphytochrome binding
GO:0046872Molecular Functionmetal ion binding
GO:0048027Molecular FunctionmRNA 5'-UTR binding
Sequence ? help Back to Top
Protein Sequence    Length: 407 aa     Download sequence    Send to blast
MSRASVTAAS SSMHHQDVLW QMNMRSREQM ESGPYPVREG EPDCSYYIRT GVCRFGPTCR  60
FNHPPNRKLA IATARMKGEY PERIGQPECQ YYLKTGTCKF GATCKFHHPR DKAGITGRVA  120
LNVLGYPLRP NEMECAYYIR NGQCKFGSTC KFHHPQPSNM MVSLRGSAVY PPIHSPTTSQ  180
LSYPLSRASF IASPRWQSPS SYAPLVMQQG VGQLGSVLSS ENQHPSAVNI QNDGASHQGD  240
SGNVASEFGS VPMGYYSFQK DNVFPERPGQ PECQFYMKTG DCKFGAVCKF HHPKERLVPV  300
PDCHLSPIGL PLRPGEPLCV FYSRYGICKF GPSCKFDHPM RVFAYNTPVS SSTDSTAVLR  360
FMASSPGTVP LNFSPDGLVD AGSTHNRRLS LSEARQKSSG DNNTDSE
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020551199.10.0zinc finger CCCH domain-containing protein ZFN-like
SwissprotQ9SWF90.0ZFNL_PEA; Zinc finger CCCH domain-containing protein ZFN-like
TrEMBLA0A4D8ZUQ80.0A0A4D8ZUQ8_SALSN; Uncharacterized protein
STRINGMigut.F01877.1.p0.0(Erythranthe guttata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA52892439
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G02830.11e-172zinc finger protein 1