PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SMil_00002919-RA_Salv
Organism
Salvia miltiorrhiza
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia
Family MIKC_MADS
Protein Properties Length: 183aa    MW: 20998.2 Da    PI: 8.6064
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SMil_00002919-RA_SalvgenomeNDCTCMView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF82.92e-26959151
                           S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
                 SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                           krie+ks rqvtfskRrng+lKKA+ELSvLCd ++  ii+s +gkly y+s
  SMil_00002919-RA_Salv  9 KRIEDKSSRQVTFSKRRNGLLKKAKELSVLCDLDIGAIIYSCRGKLYHYCS 59
                           79***********************************************96 PP
2K-box35.34.7e-131021564498
                  K-box  44 esLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkkl 98 
                            ++Ls+ + ++Le+q e++l + R++K++lll+ i+ l +kek l+ee+  L++k+
  SMil_00002919-RA_Salv 102 DDLSVADFMHLEKQFETALIQARATKTHLLLKTISSLEEKEKLLEEEKILLQEKI 156
                            589*************************************************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004327.7E-37160IPR002100Transcription factor, MADS-box
PROSITE profilePS5006629.45161IPR002100Transcription factor, MADS-box
SuperFamilySSF554559.55E-30278IPR002100Transcription factor, MADS-box
CDDcd002653.16E-36271No hitNo description
PRINTSPR004045.4E-26323IPR002100Transcription factor, MADS-box
PfamPF003192.1E-241057IPR002100Transcription factor, MADS-box
PRINTSPR004045.4E-262338IPR002100Transcription factor, MADS-box
PRINTSPR004045.4E-263859IPR002100Transcription factor, MADS-box
PROSITE profilePS512977.94670162IPR002487Transcription factor, K-box
PfamPF014868.1E-10102156IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 183 aa     Download sequence    Send to blast
MGRRKLEIKR IEDKSSRQVT FSKRRNGLLK KAKELSVLCD LDIGAIIYSC RGKLYHYCST  60
NSLSEILQRY HSRAETEAGP STQVCEKQVS RYVMEFEEPS ADDLSVADFM HLEKQFETAL  120
IQARATKTHL LLKTISSLEE KEKLLEEEKI LLQEKINGSK GKSKTKIPTI DLNALPFEER  180
MSD
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6byy_A1e-18186186MEF2 CHIMERA
6byy_B1e-18186186MEF2 CHIMERA
6byy_C1e-18186186MEF2 CHIMERA
6byy_D1e-18186186MEF2 CHIMERA
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011071241.15e-68agamous-like MADS-box protein AGL27 isoform X4
TrEMBLA0A4D9BPZ61e-70A0A4D9BPZ6_SALSN; Uncharacterized protein
STRINGXP_009795052.12e-61(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA4024625
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G65050.22e-32AGAMOUS-like 31