PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SMil_00002749-RA_Salv
Organism
Salvia miltiorrhiza
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia
Family GRF
Protein Properties Length: 337aa    MW: 36686.1 Da    PI: 9.5792
Description GRF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SMil_00002749-RA_SalvgenomeNDCTCMView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRC77.81.1e-24202246145
                    WRC   1 daepgrCrRtDGKkWRCsrrvlegkklCErHlhrgrsrsrkskee 45 
                            d+epgrCrRtDGKkWRCsr++l+++k+C+rH++rgr+rsrk++e 
  SMil_00002749-RA_Salv 202 DPEPGRCRRTDGKKWRCSRDALADHKYCDRHINRGRHRSRKPVEG 246
                            79****************************************986 PP
2QLQ54.73e-19146182137
                    QLQ   1 saFTaaQlqlLksQilAyKyLaanqPvPpeLlqaiqk 37 
                            ++FT +Q+++L++Q+ +yKy+ an+P+P++Ll +i+k
  SMil_00002749-RA_Salv 146 GPFTLSQWMELEHQAFIYKYITANVPIPSYLLNPIRK 182
                            59*********************************86 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM009511.8E-9146182IPR014978Glutamine-Leucine-Glutamine, QLQ
PROSITE profilePS5166622.247147182IPR014978Glutamine-Leucine-Glutamine, QLQ
PfamPF088801.2E-13147181IPR014978Glutamine-Leucine-Glutamine, QLQ
PROSITE profilePS5166725.049202246IPR014977WRC domain
PfamPF088791.5E-20203245IPR014977WRC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0005524Molecular FunctionATP binding
Sequence ? help Back to Top
Protein Sequence    Length: 337 aa     Download sequence    Send to blast
LYQTFQTSPL SILSLLTKRI TFTHTQQNVR NNIYLLVQLQ LSIITSPPHT FFMDSRLVQS  60
LVSSLSATAP SNHADISKLT LYGSAFLNTE CADLPPAKLP KISSCAGEMP NTAAASTAQM  120
LAFSAPPAAF PFFTNSSGYG CTSMHGPFTL SQWMELEHQA FIYKYITANV PIPSYLLNPI  180
RKALEHSGFS CFSLLRPNAL TDPEPGRCRR TDGKKWRCSR DALADHKYCD RHINRGRHRS  240
RKPVEGGATT NHHTPRCPKD KETPKMCMKD KQCNGSLLKP LDETELSMGL GVGAVASKRW  300
GGGPLGEALH TTSNGPGKCK ALNLIPSSPL GVLGGTG
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011074333.25e-61growth-regulating factor 6
TrEMBLA0A4D9BCX98e-92A0A4D9BCX9_SALSN; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA16882357
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37740.11e-44growth-regulating factor 2