PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

SMil_00002674-RA_Salv

Organism

Salvia miltiorrhiza

Taxonomic ID

226208

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia

Family

FAR1

Protein Properties

Length: 764aa MW: 87251.2 Da PI: 6.6071

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
SMil_00002674-RA_Salv	genome	NDCTCM	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	65.8	1.1e-20	73	166	1	90
FAR1 1 kfYneYAkevGFsvrkskskks.krngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkek...dgkwevtklele 84 +fY+++Ak++GFs+r+++++ + + it+r+f+C + g+++ + +++ k +r+r+++r+gC+a +++ k+ +w+vt +++ SMil_00002674-RA_Salv 73 EFYCSFAKQCGFSIRRHRTRGKdGVGRGITRRDFTCHRGGYPQLKPSADGKIQRNRKSSRCGCQAYMRIVKRAdfdVPEWRVTGFSNV 160 6*************999887455667****************9***************98887676789***** PP FAR1 85 HnHela 90 HnHel SMil_00002674-RA_Salv 161 HNHELL 166 **96 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	1.2E-17	73	166	IPR004330	FAR1 DNA binding domain
Pfam	PF10551	1.5E-21	288	380	IPR018289	MULE transposase domain
PROSITE profile	PS50966	9.359	567	600	IPR007527	Zinc finger, SWIM-type
Pfam	PF04434	8.8E-9	571	598	IPR007527	Zinc finger, SWIM-type
SMART	SM00575	2.9E-5	575	602	IPR006564	Zinc finger, PMZ-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 764 aa Download sequence Send to blast
LSPYVDIVLT VVLKMTEQTD ILNETSENGS DSSRDDNGTI EEMPEDTILS RQTSVNLVPF 60 IGQRFVSQDA AYEFYCSFAK QCGFSIRRHR TRGKDGVGRG ITRRDFTCHR GGYPQLKPSA 120 DGKIQRNRKS SRCGCQAYMR IVKRADFDVP EWRVTGFSNV HNHELLKFNE VQLLPAYCTM 180 TPDDKSRICM YAKAGMSVRQ MLRLMELEKG IKLGCLPFSE VDVRNLLQSF RNVERDHDPI 240 DLLKMCKEKK DRDPSFKYNY RIDANNRLEH IAWSYASSIR LYETFGDVVV FDTTHRLDAY 300 DMLLGIWIGV DNHGSYCFFG CLLIRDENVQ SFSWGMKTFL DFMNGKAPGT ILTDQNTWLK 360 EALAMEMPGT KHAFSIWHII SKFSDWFSVT LGSHYDNWKA EFHRLYNLHN VDEFEIGWRE 420 MVDIYGLHGN KHIVSLYALR TYWALPFLRS YFFAGMSNTF QSETINSYIQ RFLSAQSMLD 480 DFVEQVASLL DARDRGAKPK TLQKVPKTSL KTGSPIESHA ATVLTPYAFC KLQEELVLAP 540 QYATMLVDDS YFIVRHHTEV DGGCKVLWVP QDEFITCSCC HFEFSGILCR HILRVLSTNN 600 CFQIPDQYLP LRWRDSLFTK PARTSSGKVQ LLQSMISSLI TESIETEDRL NVACDHIALV 660 LARIKDFPSA AADDSNGVAY TSPSGSFILP DVEDSDSIAQ SFSGNPHECL AFAKLKDRTT 720 RDEIDMYRKR RRCTVPCCGQ FGHEIGNCTM VADDDLNTDG LGFL

Sequence ? help Back to Top

Protein Sequence Length: 764 aa Download sequence Send to blast

LSPYVDIVLT VVLKMTEQTD ILNETSENGS DSSRDDNGTI EEMPEDTILS RQTSVNLVPF  60
IGQRFVSQDA AYEFYCSFAK QCGFSIRRHR TRGKDGVGRG ITRRDFTCHR GGYPQLKPSA  120
DGKIQRNRKS SRCGCQAYMR IVKRADFDVP EWRVTGFSNV HNHELLKFNE VQLLPAYCTM  180
TPDDKSRICM YAKAGMSVRQ MLRLMELEKG IKLGCLPFSE VDVRNLLQSF RNVERDHDPI  240
DLLKMCKEKK DRDPSFKYNY RIDANNRLEH IAWSYASSIR LYETFGDVVV FDTTHRLDAY  300
DMLLGIWIGV DNHGSYCFFG CLLIRDENVQ SFSWGMKTFL DFMNGKAPGT ILTDQNTWLK  360
EALAMEMPGT KHAFSIWHII SKFSDWFSVT LGSHYDNWKA EFHRLYNLHN VDEFEIGWRE  420
MVDIYGLHGN KHIVSLYALR TYWALPFLRS YFFAGMSNTF QSETINSYIQ RFLSAQSMLD  480
DFVEQVASLL DARDRGAKPK TLQKVPKTSL KTGSPIESHA ATVLTPYAFC KLQEELVLAP  540
QYATMLVDDS YFIVRHHTEV DGGCKVLWVP QDEFITCSCC HFEFSGILCR HILRVLSTNN  600
CFQIPDQYLP LRWRDSLFTK PARTSSGKVQ LLQSMISSLI TESIETEDRL NVACDHIALV  660
LARIKDFPSA AADDSNGVAY TSPSGSFILP DVEDSDSIAQ SFSGNPHECL AFAKLKDRTT  720
RDEIDMYRKR RRCTVPCCGQ FGHEIGNCTM VADDDLNTDG LGFL

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	727	731	RKRRR

Functional Description ? help Back to Top
Source	Description
UniProt	Putative transcription activator involved in regulating light control of development.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Up-regulated in hypocotyls by far-red light treatment. {ECO:0000269\|PubMed:15591448}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011082429.1	0.0	protein FAR1-RELATED SEQUENCE 11
Refseq	XP_011082430.1	0.0	protein FAR1-RELATED SEQUENCE 11
Refseq	XP_020550427.1	0.0	protein FAR1-RELATED SEQUENCE 11
Swissprot	Q9SY66	0.0	FRS11_ARATH; Protein FAR1-RELATED SEQUENCE 11
TrEMBL	A0A4D9C133	0.0	A0A4D9C133_SALSN; Uncharacterized protein
STRING	VIT_07s0005g01120.t01	0.0	(Vitis vinifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA13535	14	16

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G10240.1	0.0	FAR1-related sequence 11

Publications ? help Back to Top
Joly-Lopez Z, et al. Abiotic Stress Phenotypes Are Associated with Conserved Genes Derived from Transposable Elements. Front Plant Sci, 2017. 8: p. 2027 [PMID:29250089]