PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

SMil_00002318-RA_Salv

Organism

Salvia miltiorrhiza

Taxonomic ID

226208

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia

Family

ZF-HD

Protein Properties

Length: 263aa MW: 29626.9 Da PI: 6.2679

Description

ZF-HD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
SMil_00002318-RA_Salv	genome	NDCTCM	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	ZF-HD_dimer	98.5	4.9e-31	40	94	3	58
ZF-HD_dimer 3 kvrYkeClkNhAaslGghavDGCgEfmpsegeegtaaalkCaACgCHRnFHRreve 58 k rYkeClkNhA+ +GghavDGCgEf+++ ge+gt ++l+CaAC CHRnFHR+e e SMil_00002318-RA_Salv 40 KSRYKECLKNHAVGIGGHAVDGCGEFIAA-GEDGTLESLRCAACSCHRNFHRKEAE 94 679***********************9.999******************987 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD125774	1.0E-22	32	94	IPR006456	ZF-HD homeobox protein, Cys/His-rich dimerisation domain
Pfam	PF04770	1.9E-28	41	93	IPR006456	ZF-HD homeobox protein, Cys/His-rich dimerisation domain
TIGRFAMs	TIGR01566	3.6E-29	42	92	IPR006456	ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PROSITE profile	PS51523	27.225	43	92	IPR006456	ZF-HD homeobox protein, Cys/His-rich dimerisation domain
SuperFamily	SSF46689	3.01E-20	163	232	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	5.3E-31	166	232	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01565	3.4E-27	173	229	IPR006455	Homeodomain, ZF-HD class

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 263 aa Download sequence Send to blast
MEYEEDQEEE QEGEIPSYDE SLPNSTRAAS PKLNSPPLRK SRYKECLKNH AVGIGGHAVD 60 GCGEFIAAGE DGTLESLRCA ACSCHRNFHR KEAEGGAAFF PFPHQQHQHQ QQLLLAHHGH 120 FGYRTPGGYL HVAAAAQPRA ALLALPSSSG GGASREEADE YNYYSNPSSG SQKKRFRTKF 180 SQEQKEKMLN FAERLGWKIQ KQDEELVQQF CNELGIKRHV LKVWMHNNKH TLGDGELCFL 240 DDPKFIYILA SYCDDDDPIL NFN

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1wh7_A	2e-24	174	231	18	75	ZF-HD homeobox family protein
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Putative transcription factor. {ECO:0000250}.

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	EU972655	1e-32	EU972655.1 Zea mays clone 385315 ZF-HD protein dimerisation region containing protein mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020554326.1	1e-106	zinc-finger homeodomain protein 2-like
Swissprot	Q6YXH5	1e-69	ZHD1_ORYSJ; Zinc-finger homeodomain protein 1
TrEMBL	A0A2G9GCD6	1e-103	A0A2G9GCD6_9LAMI; Uncharacterized protein
STRING	Migut.H02314.1.p	7e-84	(Erythranthe guttata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA518	24	128

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G24660.1	1e-58	homeobox protein 22

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764]