PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | SMil_00002306-RA_Salv | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia
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Family | HD-ZIP | ||||||||
Protein Properties | Length: 199aa MW: 22754.8 Da PI: 7.5063 | ||||||||
Description | HD-ZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 59.3 | 6.3e-19 | 63 | 118 | 1 | 56 |
TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 rrk+ ++tkeq + Lee F++n++++ +e+e LA+ l+L+ rqV vWFqNrRa+ k SMil_00002306-RA_Salv 63 RRKKLRLTKEQSRLLEESFKQNHTLNPREKETLAEILSLKPRQVEVWFQNRRARSK 118 79999*************************************************98 PP | |||||||
2 | HD-ZIP_I/II | 117 | 1e-37 | 64 | 152 | 1 | 89 |
HD-ZIP_I/II 1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLr 88 +kk+rl+keq++lLEesF+++++L+p++K++la+ L l+prqv+vWFqnrRAR k+kq+E+++e+Lkr++ +l+e+n++L+keveeLr SMil_00002306-RA_Salv 64 RKKLRLTKEQSRLLEESFKQNHTLNPREKETLAEILSLKPRQVEVWFQNRRARSKLKQTEMECEYLKRWFGSLSEQNRKLHKEVEELR 151 69*************************************************************************************9 PP HD-ZIP_I/II 89 e 89 + SMil_00002306-RA_Salv 152 A 152 3 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 2.2E-20 | 38 | 121 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 1.92E-20 | 52 | 121 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50071 | 18.172 | 60 | 120 | IPR001356 | Homeobox domain |
SMART | SM00389 | 1.1E-18 | 62 | 124 | IPR001356 | Homeobox domain |
Pfam | PF00046 | 3.1E-16 | 63 | 118 | IPR001356 | Homeobox domain |
CDD | cd00086 | 9.75E-18 | 63 | 121 | No hit | No description |
PROSITE pattern | PS00027 | 0 | 95 | 118 | IPR017970 | Homeobox, conserved site |
SMART | SM00340 | 1.3E-15 | 120 | 163 | IPR003106 | Leucine zipper, homeobox-associated |
Pfam | PF02183 | 1.7E-9 | 120 | 152 | IPR003106 | Leucine zipper, homeobox-associated |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 199 aa Download sequence Send to blast |
MENCHSAPFC LELTIGFSSS SFLSPGESTM KELDINQVPS SGTEEECMEE EEEGESPNGG 60 PARRKKLRLT KEQSRLLEES FKQNHTLNPR EKETLAEILS LKPRQVEVWF QNRRARSKLK 120 QTEMECEYLK RWFGSLSEQN RKLHKEVEEL RAINVHGHGH LPPPASALSM CPRCERVTAA 180 ANTKMSHLRH RQPPAACFL |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 112 | 120 | RRARSKLKQ |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription repressor that binds to the DNA sequence 5'-CAAT[GC]ATTG-3'. {ECO:0000269|PubMed:10732669}. | |||||
UniProt | Probable transcription repressor that binds to the DNA sequence 5'-CAAT[GC]ATTG-3'. {ECO:0000269|PubMed:10732669}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011070725.1 | 2e-73 | homeobox-leucine zipper protein HOX3 | ||||
Swissprot | Q0JKX1 | 3e-63 | HOX3_ORYSJ; Homeobox-leucine zipper protein HOX3 | ||||
Swissprot | Q9XH38 | 3e-63 | HOX3_ORYSI; Homeobox-leucine zipper protein HOX3 | ||||
TrEMBL | A0A4D8YBP0 | 1e-101 | A0A4D8YBP0_SALSN; Homeobox-leucine zipper protein | ||||
STRING | GLYMA20G01770.1 | 1e-71 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA290 | 24 | 186 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G01430.1 | 4e-59 | homeobox-leucine zipper protein 17 |