PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SMil_00002209-RA_Salv
Organism
Salvia miltiorrhiza
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia
Family C2H2
Protein Properties Length: 525aa    MW: 57915.3 Da    PI: 7.7797
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SMil_00002209-RA_SalvgenomeNDCTCMView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H212.80.00035461483123
                            EEETTTTEEESSHHHHHHHHHHT CS
                zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                            ++Cp C+++F++   L  H r+H
  SMil_00002209-RA_Salv 461 HVCPFCNRVFKNGQALGGHKRSH 483
                            79******************999 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003553.6931IPR015880Zinc finger, C2H2-like
PfamPF139122.4E-4931IPR007087Zinc finger, C2H2
PROSITE patternPS0002801131IPR007087Zinc finger, C2H2
PROSITE profilePS501579.307111138IPR007087Zinc finger, C2H2
SMARTSM003550.76111133IPR015880Zinc finger, C2H2-like
PfamPF139124.6E-6112135IPR007087Zinc finger, C2H2
PROSITE patternPS000280113133IPR007087Zinc finger, C2H2
SuperFamilySSF576672.52E-6383405No hitNo description
PROSITE profilePS501579.203383410IPR007087Zinc finger, C2H2
SMARTSM003556.3383405IPR015880Zinc finger, C2H2-like
PfamPF139121.5E-7383407IPR007087Zinc finger, C2H2
PROSITE patternPS000280385405IPR007087Zinc finger, C2H2
SuperFamilySSF576672.52E-6456483No hitNo description
SMARTSM003550.014461483IPR015880Zinc finger, C2H2-like
PfamPF139124.4E-8461483IPR007087Zinc finger, C2H2
PROSITE profilePS501579.245461483IPR007087Zinc finger, C2H2
PROSITE patternPS000280463483IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 525 aa     Download sequence    Send to blast
MDEDQELRFV CKLCFKKYPC GKSLGGHMRS HVVANSAESD EKLLDPNIKK FPSFVLVNGG  60
GGGGGGGGMQ GTMSDSRIVD LGNGQSSYGL RENPRKSWRA VDSSFPMPQE KICKQCGKGF  120
HSLKALCGHM ACHSEKDRGM KDDHSWTSES HKLVTDSHSD TEGEDRAIRT RSSKSKKFRK  180
IVVNSPFPNG SSSVSEIDGE EQEEVALCLM MLSRDNGSKG GVNSVVESSD NNSVILETKS  240
SSIDMKNVMR KCDVVKNADD DDQDGKKGVA KAANSDSGYF LDECAKAESD VSVDGFRRGS  300
GVNEYEEFRE SLNRSRSYRA EVKKALAKEN AYDYDHDHGG SSVAARIEQS RKRRYVSESC  360
DVYNEYDRIK RSDPPSAEKR LKYECFNCKK TFKSYQALGG HRPCHKKSSN ALYESRYESG  420
ENSLDDEFGA SRGKMVESTR KAAVAAAAAD KKMKAKKSKG HVCPFCNRVF KNGQALGGHK  480
RSHFIGGHEV VNTNPSPVTK LDLLDLNLPA PQDDEDDGDD QYSPW
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011070953.10.0zinc finger protein 91-like
TrEMBLA0A4D9A7370.0A0A4D9A737_SALSN; Uncharacterized protein
STRINGMigut.L01205.1.p1e-157(Erythranthe guttata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA13432255
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G26610.13e-64C2H2-like zinc finger protein