PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SMil_00002097-RA_Salv
Common NameWRKY57
Organism
Salvia miltiorrhiza
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia
Family WRKY
Protein Properties Length: 284aa    MW: 31847 Da    PI: 4.9913
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SMil_00002097-RA_SalvgenomeNDCTCMView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY106.61.3e-33145202259
                            --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
                   WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                            +Dgy+WrKYGqK vk+s+fprsYYrCt a+C+vkk+vers  dp++v++tYeg+H+h+
  SMil_00002097-RA_Salv 145 EDGYRWRKYGQKAVKNSPFPRSYYRCTNATCNVKKRVERSCADPSIVVTTYEGQHTHP 202
                            8********************************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.802.2E-34129204IPR003657WRKY domain
SuperFamilySSF1182904.18E-29136204IPR003657WRKY domain
PROSITE profilePS5081131.376139204IPR003657WRKY domain
SMARTSM007741.7E-39144203IPR003657WRKY domain
PfamPF031061.5E-26145202IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 284 aa     Download sequence    Send to blast
MEDPFPSSLS FLDHYTASGC TLAEMLDYSD EKSSSLGFME LLNTQDHFAA FEEEVEDPSI  60
HPNWNSSEVL NAPQTPNCSS ISSESSDGVK DERVNEEEDE EDEEEDDNDQ KKKTSKQLKV  120
KKTNQKKKRE QRFAFMTKSE VDHLEDGYRW RKYGQKAVKN SPFPRSYYRC TNATCNVKKR  180
VERSCADPSI VVTTYEGQHT HPSPQSLRPH APPPPSYPGF SLNNNQHQLM NYSLLVNGYM  240
GGGGGGGGGP QQLSFCSQSS PALMANNGLL QDIVPWPAAK REEH
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A4e-27134204777Probable WRKY transcription factor 4
2lex_A4e-27134204777Probable WRKY transcription factor 4
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1110128KKKTSKQLKVKKTNQKKKR
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKM8231800.0KM823180.1 Salvia miltiorrhiza WRKY protein (WRKY57) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021904268.15e-77probable WRKY transcription factor 23
SwissprotO229001e-54WRK23_ARATH; WRKY transcription factor 23
TrEMBLA0A0D5YAG91e-166A0A0D5YAG9_SALMI; WRKY protein
STRINGevm.model.supercontig_18.822e-76(Carica papaya)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA13092479
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G47260.16e-45WRKY DNA-binding protein 23
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Guo D,Qin G
    EXB1/WRKY71 transcription factor regulates both shoot branching and responses to abiotic stresses.
    Plant Signal Behav, 2016. 11(3): p. e1150404
    [PMID:26914912]
  4. Prát T, et al.
    WRKY23 is a component of the transcriptional network mediating auxin feedback on PIN polarity.
    PLoS Genet., 2018. 14(1): p. e1007177
    [PMID:29377885]