PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SMil_00002042-RA_Salv
Organism
Salvia miltiorrhiza
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia
Family C3H
Protein Properties Length: 353aa    MW: 39479.5 Da    PI: 7.0921
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SMil_00002042-RA_SalvgenomeNDCTCMView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH19.32e-061739326
                           S---SGGGGTS--TTTTT-SS-SS CS
                zf-CCCH  3 telCrffartGtCkyGdrCkFaHg 26
                           ++lC+ffa  G C  G+ C FaH+
  SMil_00002042-RA_Salv 17 RVLCKFFAH-GACLKGEHCEFAHD 39
                           79***6666.*************5 PP
2zf-CCCH25.52.3e-084767526
                           --SGGGGTS--TTTTT-SS-SS CS
                zf-CCCH  5 lCrffartGtCkyGdrCkFaHg 26
                           +C f+++ G+C yG+rC++ H+
  SMil_00002042-RA_Salv 47 ICTFYQK-GICTYGSRCRYEHV 67
                           7******.***********997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003561.8E-51540IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.771541IPR000571Zinc finger, CCCH-type
SuperFamilySSF902296.54E-71739IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.5874269IPR000571Zinc finger, CCCH-type
SMARTSM003561.2E-44468IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.57E-54566IPR000571Zinc finger, CCCH-type
PfamPF006427.2E-64767IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.104.0E-44766IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010311.854132159IPR000571Zinc finger, CCCH-type
SMARTSM003560.013134158IPR000571Zinc finger, CCCH-type
SuperFamilySSF578502.42E-14191265No hitNo description
Gene3DG3DSA:3.30.40.101.3E-10197262IPR013083Zinc finger, RING/FYVE/PHD-type
CDDcd001625.47E-5200260No hitNo description
PfamPF000972.1E-8201258IPR018957Zinc finger, C3HC4 RING-type
PROSITE profilePS5008912.755201259IPR001841Zinc finger, RING-type
SMARTSM001841.1E-7201258IPR001841Zinc finger, RING-type
PROSITE patternPS005180225234IPR017907Zinc finger, RING-type, conserved site
Gene3DG3DSA:4.10.1000.104.6E-4284318IPR000571Zinc finger, CCCH-type
SMARTSM003560.079288316IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.253288317IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 353 aa     Download sequence    Send to blast
MFLDLGEKWS VGYVDSRVLC KFFAHGACLK GEHCEFAHDW KAPSNNICTF YQKGICTYGS  60
RCRYEHVKVS HSPSTALSSS EGPLPIERPV STTDVTAEHS ASAGPPAWVG GSGHRDMLND  120
DYHIGHSNHV GTSDRGICSF AAVGECPRGE DCPHIHGDLC PICEKQCLHP FRPQEREEHL  180
KSCEKRRKHL EALRGSQEIE CSVCLEVVLS KPTSAERKFG ILSECDHSFC ISCIRNWRSS  240
SPTSGINVNS AVRTCPICRR LSYFVIPSVV WYSSSEEKQD IVQSYKTRLR SIDCKHFDFG  300
TGTCPFGTSC FYRHAFNDGR LEEVVVRHVG ADDGDTVIPK DIRISDFLNL QIR
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011087508.10.0E3 ubiquitin-protein ligase makorin
SwissprotE0X9N41e-157C3H69_ARATH; Putative RING-type E3 ubiquitin transferase C3H69
TrEMBLA0A4D9AGJ31e-180A0A4D9AGJ3_SALSN; E3 ubiquitin-protein ligase makorin
STRINGGLYMA15G42750.11e-167(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA33862149
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G08505.21e-147C3H family protein
Publications ? help Back to Top
  1. Wang CT,Ho CH,Hseu MJ,Chen CM
    The subtelomeric region of the Arabidopsis thaliana chromosome IIIR contains potential genes and duplicated fragments from other chromosomes.
    Plant Mol. Biol., 2010. 74(1-2): p. 155-66
    [PMID:20652368]