PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SMil_00001784-RA_Salv
Organism
Salvia miltiorrhiza
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia
Family MYB
Protein Properties Length: 309aa    MW: 34212.8 Da    PI: 9.9644
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SMil_00001784-RA_SalvgenomeNDCTCMView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding31.15.3e-101565147
                           TSSS-HHHHHHHHHHHHHTTTT.....-HHHHHHHHTTTS-HHHHHHHHHHH CS
        Myb_DNA-binding  1 rgrWTteEdellvdavkqlGgg.....tWktIartmgkgRtlkqcksrwqky 47
                           rg W+ eE++ + ++++++ ++     +W++Ia++++ +++  ++k++++ +
  SMil_00001784-RA_Salv 15 RGWWSREEEKAFENGIAMHWNEecreqSWTKIASMVP-TKSILELKHHYLLL 65
                           566**********************************.***********876 PP
2Myb_DNA-binding38.92.1e-12140184347
                            SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
        Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                            +WT+eE+ l++ +  ++G+g+W++I+r +   Rt+ q+ s+ qky
  SMil_00001784-RA_Salv 140 PWTEEEHRLFLLGLDKFGKGDWRSISRNFVISRTPTQVASHAQKY 184
                            7*****************************99************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS512937.3271370IPR017884SANT domain
Gene3DG3DSA:1.10.10.601.1E-41366IPR009057Homeodomain-like
SMARTSM007171.9E-41468IPR001005SANT/Myb domain
PfamPF002491.1E-81565IPR001005SANT/Myb domain
SuperFamilySSF466892.58E-81669IPR009057Homeodomain-like
CDDcd001671.48E-71866No hitNo description
PROSITE profilePS5129417.282132189IPR017930Myb domain
SuperFamilySSF466897.9E-17135190IPR009057Homeodomain-like
SMARTSM007172.3E-10137187IPR001005SANT/Myb domain
TIGRFAMsTIGR015574.4E-17137187IPR006447Myb domain, plants
Gene3DG3DSA:1.10.10.606.7E-11138183IPR009057Homeodomain-like
CDDcd001671.09E-9140185No hitNo description
PfamPF002497.7E-11140184IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009651Biological Processresponse to salt stress
GO:0009733Biological Processresponse to auxin
GO:0009739Biological Processresponse to gibberellin
GO:0009751Biological Processresponse to salicylic acid
GO:0009753Biological Processresponse to jasmonic acid
GO:0046686Biological Processresponse to cadmium ion
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 309 aa     Download sequence    Send to blast
LSSQHIRIHM SGTSRGWWSR EEEKAFENGI AMHWNEECRE QSWTKIASMV PTKSILELKH  60
HYLLLLEDVA AIEAGNVPLP SYNITTSSLL STTTYNHPKD KPFSNSTFSS HDSVTAQPPA  120
AAKAGGGSSR SDQERRKGIP WTEEEHRLFL LGLDKFGKGD WRSISRNFVI SRTPTQVASH  180
AQKYFIRLNS MNRDRRRSSI HDITSVNGEI PSSAHMPPLI TGQHVHPPPP AAPPAMKHQH  240
RPNMHGLGMY GGAPVGQPVA VPPGRHIASA VGTPVMMPPG HHHHHHHHHP PYVLPVGCPM  300
PPPPPPPMN
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator that binds to 5'-TATCCA-3' elements in gene promoters. Derepresses strongly the sugar-repressed transcription of promoters containing SRS or 5'-TATCCA-3' elements. Functions with GAMYB to integrate diverse nutrient starvation and gibberellin (GA) signaling pathways during germination of grains. Sugar, nitrogen and phosphate starvation signals converge and interconnect with GA to promote the co-nuclear import of MYBS1 and GAMYB, resulting in the expression of a large set of GA-inducible hydrolases, transporters, and regulators that are essential for mobilization of nutrient reserves in the endosperm to support seedling growth (PubMed:22773748). {ECO:0000269|PubMed:12172034, ECO:0000269|PubMed:22773748}.
UniProtTranscription activator that binds to 5'-TATCCA-3' elements in gene promoters. Derepress strongly the sugar-repressed transcription of promoters containing SRS or 5'-TATCCA-3' elements. {ECO:0000250|UniProtKB:Q8LH59}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00191DAPTransfer from AT1G49010Download
Motif logo
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Repressed by sucrose and gibberellic acid (GA). {ECO:0000269|PubMed:12172034}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011073055.11e-122LOW QUALITY PROTEIN: transcription factor MYBS1
SwissprotB8A9B24e-72MYBS1_ORYSI; Transcription factor MYBS1
SwissprotQ8LH594e-72MYBS1_ORYSJ; Transcription factor MYBS1
TrEMBLA0A4D8YKR71e-158A0A4D8YKR7_SALSN; Uncharacterized protein
STRINGPGSC0003DMT4000143501e-115(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA58012136
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G49010.11e-59MYB family protein
Publications ? help Back to Top
  1. Hong YF, et al.
    Convergent starvation signals and hormone crosstalk in regulating nutrient mobilization upon germination in cereals.
    Plant Cell, 2012. 24(7): p. 2857-73
    [PMID:22773748]