PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SMil_00001752-RA_Salv
Organism
Salvia miltiorrhiza
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia
Family LBD
Protein Properties Length: 280aa    MW: 31719.4 Da    PI: 5.5853
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SMil_00001752-RA_SalvgenomeNDCTCMView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260107.21.3e-33101091100
                 DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqle 88 
                            aCa+Ck++rr+C+++C lap fpa+qp+ f nvh+lFG++n++kllk+l++++r +a++s+ ++A +r r Pv G++  +++l  q++
  SMil_00001752-RA_Salv  10 ACASCKFQRRRCTPQCLLAPFFPADQPQVFHNVHRLFGVKNIQKLLKELHPDQRAIAIKSVKFHAAMRERYPVCGCLVEVQNLAYQIQ 97 
                            7*************************************************************************************** PP

                 DUF260  89 qlkaelallkee 100
                             +++el+++ ++
  SMil_00001752-RA_Salv  98 LAEKELHAVLQQ 109
                            ******998776 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089123.3869110IPR004883Lateral organ boundaries, LOB
PfamPF031955.2E-3210106IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 280 aa     Download sequence    Send to blast
MTLRGSSGQA CASCKFQRRR CTPQCLLAPF FPADQPQVFH NVHRLFGVKN IQKLLKELHP  60
DQRAIAIKSV KFHAAMRERY PVCGCLVEVQ NLAYQIQLAE KELHAVLQQL LYYRQQQRQQ  120
QDTSPGDDYL SQLQLGMAPP GNAAMVAALI QQDDQPEYNL VAAHPSSCSN NVNRDHYNKD  180
CNDVDSLCSY SNNDYNNNAN SAVMQSQMPT SQTIPQVPQD YNEMYSFFDN IDDRQSYIGP  240
KEVYESSLDS SVRDCRQSDE QIAENELKNA AACFSLTSFN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5ly0_A1e-2761137114LOB family transfactor Ramosa2.1
5ly0_B1e-2761137114LOB family transfactor Ramosa2.1
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011071735.11e-126LOB domain-containing protein 27
TrEMBLA0A4D9A1031e-147A0A4D9A103_SALSN; Uncharacterized protein
STRINGMigut.D01865.1.p2e-88(Erythranthe guttata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA14492375
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G47870.12e-36LOB domain-containing protein 27