PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | SMil_00001622-RA_Salv | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia
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Family | YABBY | ||||||||
Protein Properties | Length: 191aa MW: 22189.6 Da PI: 5.7406 | ||||||||
Description | YABBY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | YABBY | 62.5 | 1.8e-19 | 24 | 96 | 4 | 76 |
YABBY 4 fssseqvCyvqCnfCntil.avsvPstslfkvvtvrCGhCtsllsvnlakasqllaaeshldeslkeelleelk 76 ++ eq+Cyv+C fCntil +vsvP +sl +vv +rCGhC +++s+n+ + l + +l+ e++++e++ SMil_00001622-RA_Salv 24 HDLQEQICYVKCCFCNTILlVVSVPCSSLAMVVRIRCGHCDNIFSLNMLHLFPSLHQMPDLEV-CDEKVADEEE 96 6789*************97368***********************998877655555555433.2333443333 PP | |||||||
2 | YABBY | 87.5 | 3.5e-27 | 94 | 159 | 102 | 166 |
YABBY 102 senedeevprvpp.virPPekrqrvPsaynrfikeeiqrikasnPdishreafsaaaknWahfPki 166 +e+ede+ + + +PPek+qr+P+ayn fik ei+r+k + P+i+h++afsaaaknWah P+ SMil_00001622-RA_Salv 94 EEEEDEDYVWCNQvIHKPPEKKQRAPTAYNHFIKYEIRRLKLQHPNITHKQAFSAAAKNWAHCPQS 159 45566666666674789***********************************************85 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF04690 | 3.3E-41 | 27 | 160 | IPR006780 | YABBY protein |
SuperFamily | SSF47095 | 1.09E-7 | 106 | 160 | IPR009071 | High mobility group box domain |
Gene3D | G3DSA:1.10.30.10 | 4.1E-5 | 110 | 160 | IPR009071 | High mobility group box domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0007275 | Biological Process | multicellular organism development |
Sequence ? help Back to Top |
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Protein Sequence Length: 191 aa Download sequence Send to blast |
LLHCILVNFP FNSLSLIKKM STLHDLQEQI CYVKCCFCNT ILLVVSVPCS SLAMVVRIRC 60 GHCDNIFSLN MLHLFPSLHQ MPDLEVCDEK VADEEEEDED YVWCNQVIHK PPEKKQRAPT 120 AYNHFIKYEI RRLKLQHPNI THKQAFSAAA KNWAHCPQSE YRDGEVYGCD EGDRDMVMQW 180 TVDDEVIIGI Y |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Essential for the formation and the abaxial-adaxial asymmetric growth of the ovule outer integument. {ECO:0000269|PubMed:10601041, ECO:0000269|PubMed:12183380, ECO:0000269|PubMed:9093862, ECO:0000269|PubMed:9118807}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Autoinduction down-regulated by SUP in adaxial region of the ovule outer integument. Negatively and spatially regulated by HLL, ANT, BELL1, NZZ/SPL and SUP. {ECO:0000269|PubMed:10601041, ECO:0000269|PubMed:12183380, ECO:0000269|PubMed:12183381}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011087090.1 | 6e-66 | axial regulator YABBY 4 | ||||
Swissprot | Q9LDT3 | 2e-38 | YAB4_ARATH; Axial regulator YABBY 4 | ||||
TrEMBL | A0A2G9GYG9 | 3e-59 | A0A2G9GYG9_9LAMI; Uncharacterized protein | ||||
STRING | Migut.L01462.1.p | 5e-55 | (Erythranthe guttata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA381 | 24 | 163 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G26580.2 | 1e-37 | YABBY family protein |
Publications ? help Back to Top | |||
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