PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

SMil_00001147-RA_Salv

Organism

Salvia miltiorrhiza

Taxonomic ID

226208

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia

Family

C3H

Protein Properties

Length: 403aa MW: 43076.8 Da PI: 4.7266

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
SMil_00001147-RA_Salv	genome	NDCTCM	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	35.4	1.8e-11	144	170	1	27
--S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27 yk + C+f+ +G+C++G+ C+FaHg+ SMil_00001147-RA_Salv 144 YKNRVCHFWETSGICQFGSECQFAHGK 170 899**********************96 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:4.10.1000.10	4.4E-13	140	175	IPR000571	Zinc finger, CCCH-type
SuperFamily	SSF90229	1.16E-8	142	175	IPR000571	Zinc finger, CCCH-type
PROSITE profile	PS50103	15.497	143	171	IPR000571	Zinc finger, CCCH-type
SMART	SM00356	2.5E-6	143	170	IPR000571	Zinc finger, CCCH-type
Pfam	PF00642	2.1E-8	144	170	IPR000571	Zinc finger, CCCH-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 403 aa Download sequence Send to blast
MHTMFLENKR ETEGPKLQSG FVSPINLMSV AGGRRSRSVF DPYASDSSDS PSPLMKFLRS 60 VDPAAGGASS PGFVTPVKVE EDVIVMDGIS VPKSNKGSGE VRLRLPLMSS NSVNCSYGKS 120 NSTGSSSSSG SGGRRSGVEN SKSYKNRVCH FWETSGICQF GSECQFAHGK EELRHHRWFP 180 GKIKLEISKL NSSIEGSSPS PTPSPHGSKF LRNSQVKAAA AAGEEAFSLP SLSSLSPIPA 240 KLVSGTSAPN TALLISEWTP QVDGIEATLP CVGKSPPKED GDHCVVNMAA FADTTELRWR 300 GGNNRGRRAW RRCGFREEEG EGNEEEGEKQ GGELERSEEV DGAAAFDEWI DVGGDDELVY 360 DCDDEAENDG VEMQMLPPVV MLVGSGGGGE GEGMVGFGDE KIW

Sequence ? help Back to Top

Protein Sequence Length: 403 aa Download sequence Send to blast

MHTMFLENKR ETEGPKLQSG FVSPINLMSV AGGRRSRSVF DPYASDSSDS PSPLMKFLRS  60
VDPAAGGASS PGFVTPVKVE EDVIVMDGIS VPKSNKGSGE VRLRLPLMSS NSVNCSYGKS  120
NSTGSSSSSG SGGRRSGVEN SKSYKNRVCH FWETSGICQF GSECQFAHGK EELRHHRWFP  180
GKIKLEISKL NSSIEGSSPS PTPSPHGSKF LRNSQVKAAA AAGEEAFSLP SLSSLSPIPA  240
KLVSGTSAPN TALLISEWTP QVDGIEATLP CVGKSPPKED GDHCVVNMAA FADTTELRWR  300
GGNNRGRRAW RRCGFREEEG EGNEEEGEKQ GGELERSEEV DGAAAFDEWI DVGGDDELVY  360
DCDDEAENDG VEMQMLPPVV MLVGSGGGGE GEGMVGFGDE KIW

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012828281.1	2e-65	PREDICTED: uncharacterized protein LOC105949527
TrEMBL	A0A4D8ZTF3	1e-126	A0A4D8ZTF3_SALSN; Uncharacterized protein

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA7765	18	24

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G35430.1	2e-07	C3H family protein