PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

SMil_00001088-RA_Salv

Common Name

MYB25, MYB90

Organism

Salvia miltiorrhiza

Taxonomic ID

226208

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia

Family

MYB

Protein Properties

Length: 247aa MW: 27881.1 Da PI: 6.1627

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
SMil_00001088-RA_Salv	genome	NDCTCM	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	43.3	8.4e-14	15	64	2	48
SSS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 2 grWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrwqkyl 48 g+W++eEd +l +++q+ ++ +W++ ++ g++R++k+c++rw +yl SMil_00001088-RA_Salv 15 GAWSEEEDNKLRACINQFKNHkvpNWRLLPSVAGLKRCGKSCRLRWVNYL 64 89**********************************************97 PP
2	Myb_DNA-binding	57.9	2.3e-18	70	113	1	46
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 rg++T++E+ l++++++qlG++ W++Ia++++ gRt++++k++w+ SMil_00001088-RA_Salv 70 RGNFTKDEENLIIQLHNQLGNK-WSAIAAHFP-GRTDNDIKNYWHA 113 89******************.*****.*********85 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	10.277	9	64	IPR017930	Myb domain
SuperFamily	SSF46689	4.49E-27	12	111	IPR009057	Homeodomain-like
SMART	SM00717	3.5E-10	13	66	IPR001005	SANT/Myb domain
Gene3D	G3DSA:1.10.10.60	7.4E-20	15	71	IPR009057	Homeodomain-like
Pfam	PF00249	1.9E-12	15	64	IPR001005	SANT/Myb domain
CDD	cd00167	1.56E-7	16	64	No hit	No description
PROSITE profile	PS51294	24.829	65	119	IPR017930	Myb domain
SMART	SM00717	1.2E-16	69	117	IPR001005	SANT/Myb domain
Pfam	PF00249	9.0E-17	70	113	IPR001005	SANT/Myb domain
CDD	cd00167	2.16E-12	72	115	No hit	No description
Gene3D	G3DSA:1.10.10.60	2.9E-25	72	117	IPR009057	Homeodomain-like

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 247 aa Download sequence Send to blast
MVRPASIDKN GMRSGAWSEE EDNKLRACIN QFKNHKVPNW RLLPSVAGLK RCGKSCRLRW 60 VNYLKPGLKR GNFTKDEENL IIQLHNQLGN KWSAIAAHFP GRTDNDIKNY WHAHVAKRRN 120 GSMKIRNLAQ EEQSSDSNSS TITTGLNQNT PAPSKVALLI SQLGLENIGV FESNADSDFN 180 PAAAAADDDD LYQHKFFDEQ EFDHEQVCSL LDWGDLSAAK SQLDFMSEPV DKDDFFNINF 240 GDVLWGI

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1a5j_A	5e-20	14	118	7	107	B-MYB
Search in ModeBase

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	KF059379	0.0	KF059379.1 Salvia miltiorrhiza MYB-related transcription factor (MYB25) mRNA, complete cds.
GenBank	KF059444	0.0	KF059444.1 Salvia miltiorrhiza MYB-related transcription factor (MYB90) mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
TrEMBL	A0A059PRR5	0.0	A0A059PRR5_SALMI; MYB-related transcription factor
STRING	Migut.M00367.1.p	3e-60	(Erythranthe guttata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA12	24	2154

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G06180.1	4e-47	myb domain protein 13

Publications ? help Back to Top
Li C,Lu S Genome-wide characterization and comparative analysis of R2R3-MYB transcription factors shows the complexity of MYB-associated regulatory networks in Salvia miltiorrhiza. BMC Genomics, 2014. 15: p. 277 [PMID:24725266]