PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | SMil_00000968-RA_Salv | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia
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Family | HD-ZIP | ||||||||
Protein Properties | Length: 302aa MW: 34283.7 Da PI: 4.6105 | ||||||||
Description | HD-ZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 60.7 | 2.3e-19 | 81 | 134 | 3 | 56 |
--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 k++++t++q++ Le+ Fe ++++ e++ +LA++lgL+ rq+ vWFqNrRa++k SMil_00000968-RA_Salv 81 KKRRLTADQVQFLERSFEADNKLEPERKVQLANELGLKPRQIAVWFQNRRARWK 134 56789************************************************9 PP | |||||||
2 | HD-ZIP_I/II | 127.4 | 5.9e-41 | 80 | 170 | 1 | 91 |
HD-ZIP_I/II 1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLr 88 ekkrrl+++qv++LE+sFe+++kLeperKv+la+eLgl+prq+avWFqnrRAR+ktkqlE+dye+ +++y++lk++ ++L ke+++L+ SMil_00000968-RA_Salv 80 EKKRRLTADQVQFLERSFEADNKLEPERKVQLANELGLKPRQIAVWFQNRRARWKTKQLETDYETFHARYETLKSDYDNLVKENDKLK 167 69************************************************************************************** PP HD-ZIP_I/II 89 eel 91 +e+ SMil_00000968-RA_Salv 168 AEV 170 987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46689 | 3.08E-19 | 66 | 138 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50071 | 17.912 | 76 | 136 | IPR001356 | Homeobox domain |
SMART | SM00389 | 4.9E-19 | 79 | 140 | IPR001356 | Homeobox domain |
CDD | cd00086 | 4.05E-18 | 81 | 137 | No hit | No description |
Pfam | PF00046 | 9.8E-17 | 81 | 134 | IPR001356 | Homeobox domain |
Gene3D | G3DSA:1.10.10.60 | 1.6E-20 | 82 | 143 | IPR009057 | Homeodomain-like |
PRINTS | PR00031 | 1.4E-5 | 107 | 116 | IPR000047 | Helix-turn-helix motif |
PROSITE pattern | PS00027 | 0 | 111 | 134 | IPR017970 | Homeobox, conserved site |
PRINTS | PR00031 | 1.4E-5 | 116 | 132 | IPR000047 | Helix-turn-helix motif |
Pfam | PF02183 | 4.0E-14 | 136 | 175 | IPR003106 | Leucine zipper, homeobox-associated |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 302 aa Download sequence Send to blast |
LDMAGSAAVY GGGDAPNQAK KRNFDQPLDS IAAESSLGSN TMLNFGAVGG VKRSRNMLFS 60 SLDQEEFGEE YLDEYFNQQE KKRRLTADQV QFLERSFEAD NKLEPERKVQ LANELGLKPR 120 QIAVWFQNRR ARWKTKQLET DYETFHARYE TLKSDYDNLV KENDKLKAEV LRLKQNDVGG 180 DTEKVNLHLL DNKGLPKAMP REANARVISE DEESNGSVFA FKNEEQSSAK SEASNVGSPR 240 LTDGIHSPLL ESGITSHAFD RDYSDSSQIG EDNLHEEPDY VFPLSSFYYD GFPVEDHAFN 300 FW |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 128 | 136 | RRARWKTKQ |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011087214.1 | 1e-103 | homeobox-leucine zipper protein HAT5 | ||||
TrEMBL | A0A4D9A6R2 | 1e-174 | A0A4D9A6R2_SALSN; Homeobox-leucine zipper protein | ||||
STRING | Migut.D01856.1.p | 2e-97 | (Erythranthe guttata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA825 | 24 | 95 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G01470.1 | 8e-41 | homeobox 1 |