PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SMil_00000807-RA_Salv
Organism
Salvia miltiorrhiza
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia
Family HSF
Protein Properties Length: 233aa    MW: 26514.9 Da    PI: 9.0799
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SMil_00000807-RA_SalvgenomeNDCTCMView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind113.71.2e-35221132102
                            HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXX CS
           HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkg 89 
                            Fl k+y ++ed+e++++isw+++g++fvv+++ efa+++Lp+ Fkhsnf+SFvRQLn+YgF+kv +++         weF+++ F+kg
  SMil_00000807-RA_Salv  22 FLLKTYMLVEDPETDDVISWNADGTAFVVWQPPEFARDLLPTLFKHSNFSSFVRQLNTYGFHKVATNR---------WEFSNDMFRKG 100
                            9****************************************************************999.........*********** PP

                            XXXXXXXXXXXXX CS
           HSF_DNA-bind  90 kkellekikrkks 102
                            ++e+l++i+r+k 
  SMil_00000807-RA_Salv 101 EREQLCEIRRRKA 113
                            **********985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.105.9E-3715106IPR011991Winged helix-turn-helix DNA-binding domain
SuperFamilySSF467855.53E-3418111IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004151.2E-5318111IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.6E-182245IPR000232Heat shock factor (HSF)-type, DNA-binding
PfamPF004476.9E-3222111IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.6E-186072IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS0043406185IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.6E-187385IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0046686Biological Processresponse to cadmium ion
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 233 aa     Download sequence    Send to blast
MEAGEREKAV LEYVRKASPP PFLLKTYMLV EDPETDDVIS WNADGTAFVV WQPPEFARDL  60
LPTLFKHSNF SSFVRQLNTY GFHKVATNRW EFSNDMFRKG EREQLCEIRR RKAWSNKAQP  120
NVQAAAAPPQ SENEEQRSSS TSSSSEFTTL VDENKRLKKE NGVLNSELAF MKKKCKELLD  180
LVAVHGGGRE EAEPEEGPKL FGVRLGVKSE KEKKRKRAHE TSKSAGMLIH ANN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5d5w_B2e-21221114104Putative transcription factor
5d5x_B2e-21221114104Putative transcription factor
5d5x_E2e-21221114104Putative transcription factor
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds DNA sequence 5'-AGAAnnTTCT-3' known as heat shock promoter elements (HSE).
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00305DAPTransfer from AT2G41690Download
Motif logo
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_022888274.11e-111heat stress transcription factor B-3-like
SwissprotO222305e-70HSFB3_ARATH; Heat stress transcription factor B-3
TrEMBLA0A4D9A2M11e-128A0A4D9A2M1_SALSN; Heat shock transcription factor, other eukaryote
STRINGMigut.J01747.1.p1e-108(Erythranthe guttata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA44232241
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G41690.13e-61heat shock transcription factor B3