PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

SMil_00000738-RA_Salv

Organism

Salvia miltiorrhiza

Taxonomic ID

226208

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia

Family

M-type_MADS

Protein Properties

Length: 151aa MW: 17008.9 Da PI: 5.3599

Description

M-type_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
SMil_00000738-RA_Salv	genome	NDCTCM	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	36.8	5.1e-12	11	57	3	49
--SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS SRF-TF 3 ienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49 i +ks+r++tf+kRrng+ K A+E + d + ++ifss+++ y + SMil_00000738-RA_Salv 11 IPDKSKRHTTFTKRRNGLTKIAYEFCRKFDSTAVLLIFSSSQNCYAF 57 779***************************************99987 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50066	17.759	1	61	IPR002100	Transcription factor, MADS-box
SMART	SM00432	4.2E-11	1	60	IPR002100	Transcription factor, MADS-box
SuperFamily	SSF55455	3.79E-17	3	70	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	6.1E-8	3	23	IPR002100	Transcription factor, MADS-box
CDD	cd00120	7.86E-15	4	60	No hit	No description
Pfam	PF00319	4.5E-13	11	57	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	6.1E-8	23	38	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	6.1E-8	38	59	IPR002100	Transcription factor, MADS-box

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 151 aa Download sequence Send to blast
MGWRRIEITL IPDKSKRHTT FTKRRNGLTK IAYEFCRKFD STAVLLIFSS SQNCYAFGHP 60 EIDSVLNRYE VDSSSAEAGT SAAEERAVTE MERRIGNAVE SGRWEEAVRG LGLDAFDQLT 120 AELENIRRQV AAFQTKFAAA PEEETQDPGR S

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA40	24	625

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G45650.1	1e-13	AGAMOUS-like 6