PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | SMil_00000592-RA_Salv | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia
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Family | HD-ZIP | ||||||||
Protein Properties | Length: 214aa MW: 24371.9 Da PI: 8.1042 | ||||||||
Description | HD-ZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 57.5 | 2.4e-18 | 72 | 126 | 2 | 56 |
T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 rk+ ++tk+q ++Le+ F +n+ ++ +e+e LA +l+L+ rqV vWFqNrRa+ k SMil_00000592-RA_Salv 72 RKKLRLTKDQSRRLEQSFLQNQALNPKEKEALAVELRLKPRQVEVWFQNRRARSK 126 78889************************************************98 PP | |||||||
2 | HD-ZIP_I/II | 108.4 | 5e-35 | 72 | 159 | 1 | 88 |
HD-ZIP_I/II 1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLr 88 +kk+rl+k+q++ LE+sF +++ L+p++K++la eL+l+prqv+vWFqnrRAR k+kq+E ++e+Lkr++ al+e+n++L+keveeLr SMil_00000592-RA_Salv 72 RKKLRLTKDQSRRLEQSFLQNQALNPKEKEALAVELRLKPRQVEVWFQNRRARSKMKQTEIECEYLKRWLGALTEQNRKLQKEVEELR 159 69*************************************************************************************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 7.5E-19 | 47 | 129 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 4.23E-19 | 61 | 129 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50071 | 17.006 | 68 | 128 | IPR001356 | Homeobox domain |
SMART | SM00389 | 2.1E-15 | 70 | 132 | IPR001356 | Homeobox domain |
CDD | cd00086 | 3.50E-16 | 71 | 126 | No hit | No description |
Pfam | PF00046 | 9.0E-16 | 72 | 126 | IPR001356 | Homeobox domain |
PROSITE pattern | PS00027 | 0 | 103 | 126 | IPR017970 | Homeobox, conserved site |
Pfam | PF02183 | 4.2E-7 | 128 | 159 | IPR003106 | Leucine zipper, homeobox-associated |
SMART | SM00340 | 2.3E-16 | 128 | 171 | IPR003106 | Leucine zipper, homeobox-associated |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 214 aa Download sequence Send to blast |
LFADFMEILN PNSTCLELSI AMPGFSSSPS SSEAKGEMKL LDMNEAPSRS EEECVEEEDE 60 DCPYGGGGPI PRKKLRLTKD QSRRLEQSFL QNQALNPKEK EALAVELRLK PRQVEVWFQN 120 RRARSKMKQT EIECEYLKRW LGALTEQNRK LQKEVEELRF IKAAPPPRQV SALTMCPRCE 180 RTTLLDKGRA TTAAASEGKV PFLRHSSDPL VIYK |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 120 | 128 | RRARSKMKQ |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor. {ECO:0000250}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011070725.1 | 2e-74 | homeobox-leucine zipper protein HOX3 | ||||
Swissprot | Q8S9N6 | 2e-64 | ATB17_ARATH; Homeobox-leucine zipper protein ATHB-17 | ||||
TrEMBL | D7T8T6 | 2e-70 | D7T8T6_VITVI; Uncharacterized protein | ||||
STRING | VIT_01s0011g04870.t01 | 3e-71 | (Vitis vinifera) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA290 | 24 | 186 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G01430.1 | 3e-60 | homeobox-leucine zipper protein 17 |
Publications ? help Back to Top | |||
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