PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | SMil_00000500-RA_Salv | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia
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Family | C3H | ||||||||
Protein Properties | Length: 359aa MW: 39448.3 Da PI: 7.4561 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 18.6 | 3.4e-06 | 138 | 159 | 4 | 26 |
---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 4 elCrffartGtCkyGdrCkFaHg 26 + C++f+r G C++Gd C aHg SMil_00000500-RA_Salv 138 SACPDFRR-GACRRGDACEHAHG 159 67******.*************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00356 | 0.0011 | 134 | 160 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 12.117 | 135 | 161 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 1.4E-4 | 135 | 161 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 1.8E-4 | 138 | 159 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 6.155 | 169 | 193 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 16 | 169 | 192 | IPR000571 | Zinc finger, CCCH-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005886 | Cellular Component | plasma membrane | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 359 aa Download sequence Send to blast |
MMMMMISDPP RSNPTVQIPP WDPYLEDPAP YINSPAAVTN HGDFTQYDVA LAALQRYLPS 60 NKDEYAAAAA DGGGGGGGDD DDFDIPVDAY SCDEFRMFEF KVKRCGRARS HDWTECPFAH 120 PGEKARRRDP RRHHYSGSAC PDFRRGACRR GDACEHAHGV FECWLHPARY RTQPCKDGTH 180 CRRRVCFFAH TPEQLRILPY TAGAGDGSSP RSSAQYSPPS TPATASPPAS PMSQLAESMR 240 GMQINKMKLG LGMGMGMGLS MSPPNWGGGG YGSPCSPGKI LPGFRSLPAT PVRAVARRGP 300 NAFDLWESWS EEEPAMERVE SGRALRERIY SKLGKENSLD RVGQADSVPD FGWVSELVK |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | EU969239 | 9e-90 | EU969239.1 Zea mays clone 327364 hypothetical protein mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011081722.1 | 1e-174 | zinc finger CCCH domain-containing protein 23 | ||||
Swissprot | Q9M0G2 | 1e-108 | C3H49_ARATH; Zinc finger CCCH domain-containing protein 49 | ||||
TrEMBL | A0A4D8YXN9 | 0.0 | A0A4D8YXN9_SALSN; Uncharacterized protein | ||||
STRING | Migut.A00165.1.p | 1e-149 | (Erythranthe guttata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA1857 | 21 | 58 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G29190.1 | 2e-97 | C3H family protein |
Publications ? help Back to Top | |||
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