PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SMil_00000447-RA_Salv
Common NameWRKY52
Organism
Salvia miltiorrhiza
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia
Family WRKY
Protein Properties Length: 173aa    MW: 19311.3 Da    PI: 7.1949
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SMil_00000447-RA_SalvgenomeNDCTCMView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY97.39.8e-31111169159
                            ---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
                   WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                            l+Dgy+WrKYG+K+vk+s++pr+YY+C+ +gCpvkk+ver++ed ++v++tYeg Hnhe
  SMil_00000447-RA_Salv 111 LNDGYKWRKYGKKMVKNSPNPRNYYKCSIEGCPVKKRVERDKEDRRYVVTTYEGIHNHE 169
                            58********************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.801.1E-3297171IPR003657WRKY domain
SuperFamilySSF1182909.68E-28104171IPR003657WRKY domain
PROSITE profilePS5081131.272106171IPR003657WRKY domain
SMARTSM007741.4E-33111170IPR003657WRKY domain
PfamPF031061.2E-23112169IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 173 aa     Download sequence    Send to blast
MIMAENYHNT NISGASSGSG GSSAHARGGH GHEPGFDFTN FDAWFDGFPA DFSSFSHLLN  60
CMPNELEAES GDASYTSSLS GETTINGESG RERRGIKEKV AFKTKSEIEI LNDGYKWRKY  120
GKKMVKNSPN PRNYYKCSIE GCPVKKRVER DKEDRRYVVT TYEGIHNHEG PTI
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ayd_A1e-2599171274WRKY transcription factor 1
Search in ModeBase
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKM8231750.0KM823175.1 Salvia miltiorrhiza WRKY protein (WRKY52) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011100937.12e-54probable WRKY transcription factor 50
TrEMBLA0A0D5YAG41e-124A0A0D5YAG4_SALMI; WRKY protein
STRINGMigut.E01579.1.p3e-52(Erythranthe guttata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA21242462
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G26170.11e-29WRKY DNA-binding protein 50