PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SMil_00000331-RA_Salv
Organism
Salvia miltiorrhiza
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia
Family GATA
Protein Properties Length: 602aa    MW: 66495.4 Da    PI: 10.2802
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SMil_00000331-RA_SalvgenomeNDCTCMView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA58.49.3e-19229262134
                   GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkg 34 
                            C++C++tkTplWR+gp g+ktLCnaCG+ yr+ +
  SMil_00000331-RA_Salv 229 CAHCQSTKTPLWREGPLGPKTLCNACGVQYRSGR 262
                            *******************************987 PP
2GATA57.61.7e-18530564135
                   GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 
                            Cs+C+++kTp+WR+gp g+ tLCnaCGl+yr+ +l
  SMil_00000331-RA_Salv 530 CSHCQSSKTPQWREGPLGPQTLCNACGLRYRSGRL 564
                            *******************************9986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004012.0E-16223273IPR000679Zinc finger, GATA-type
PROSITE profilePS5011412.519223259IPR000679Zinc finger, GATA-type
SuperFamilySSF577166.65E-14223285No hitNo description
CDDcd002025.34E-14228275No hitNo description
Gene3DG3DSA:3.30.50.102.6E-14228260IPR013088Zinc finger, NHR/GATA-type
PROSITE patternPS003440229254IPR000679Zinc finger, GATA-type
PfamPF003201.5E-16229262IPR000679Zinc finger, GATA-type
SMARTSM004011.0E-16524578IPR000679Zinc finger, GATA-type
PROSITE profilePS5011412.031528560IPR000679Zinc finger, GATA-type
SuperFamilySSF577169.5E-14528586No hitNo description
CDDcd002028.10E-16529586No hitNo description
Gene3DG3DSA:3.30.50.102.3E-14529561IPR013088Zinc finger, NHR/GATA-type
PROSITE patternPS003440530555IPR000679Zinc finger, GATA-type
PfamPF003201.9E-16530564IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 602 aa     Download sequence    Send to blast
LDKYCLILCF RNMSMVGNSL DPDEEYDALF NILDFPIECL EGDEVAADWD SSNAQFLGPI  60
PSSVLMEQPM MSNEEFNVPN LFPRPVAPIA AASKLKQLHE HVDTSRLCIP RQRKFAKVQE  120
SGSFHTQSPV SVLESSSSCL REKSLSIKSE HAVPARSRSK RVRYSGINPW LLAAHELSTS  180
KRTSNAGRST ENRKRLFLQP VSIDLMRKSP KNVENSLMVP DPAHQVKKCA HCQSTKTPLW  240
REGPLGPKTL CNACGVQYRS GRLFPEYRPA ASPTFVPSQH SNSHRKVAEM RSGTKQLKVK  300
IEIVGAPDQK QLTKHVKRMQ LAKHVDTSSS LQSAGAAKQR QLAELVDTSS SLQIAGAPKQ  360
KLLAKYDDTY SSQIPLQNKL AKIQESGASC TQSHVSLLQS SSYVRYRSKY VEPAGVNLGF  420
LPSPCKKASS SMRGKENRKK LFKVPVAFGV MINSPEKDGV SLDVSDPAPL QNASNSMKGK  480
QSRKRLLQLP VAVDVMKSSP KKEDASLDVS DLARLRNASN PSCPAVVKKC SHCQSSKTPQ  540
WREGPLGPQT LCNACGLRYR SGRLLPEYRP AASPTFVPSQ HSNSHKKLVQ MRIKAMKLTA  600
DI
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1155160RSRSKR
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020552412.11e-104GATA transcription factor 11-like
TrEMBLA0A4D8ZJM21e-134A0A4D8ZJM2_SALSN; Uncharacterized protein
STRINGXP_009621793.18e-71(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA31342149
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G08010.23e-34GATA transcription factor 11