PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

SMil_00000289-RA_Salv

Organism

Salvia miltiorrhiza

Taxonomic ID

226208

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia

Family

C3H

Protein Properties

Length: 567aa MW: 63093.6 Da PI: 6.8492

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
SMil_00000289-RA_Salv	genome	NDCTCM	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	20.7	7.1e-07	126	145	5	25
--SGGGGTS--TTTTT-SS-S CS zf-CCCH 5 lCrffartGtCkyGdrCkFaH 25 C f+a+ G+C +G +C+F H SMil_00000289-RA_Salv 126 VCEFHAK-GWCIRGKTCRFLH 145 5999999.************* PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF90229	1.7E-5	121	145	IPR000571	Zinc finger, CCCH-type
PROSITE profile	PS50103	13.037	121	148	IPR000571	Zinc finger, CCCH-type
Pfam	PF00642	8.9E-5	126	145	IPR000571	Zinc finger, CCCH-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0010220	Biological Process	positive regulation of vernalization response
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 567 aa Download sequence Send to blast
MGQSSNIFLQ KSVYMVKILE LDEHKDHRHS SSLTEGVFVK SIGDAKTSES SEKEGLYVND 60 VNATSTMANA SGENVSAIAS IMAETNHSAL EGVGNISPRL HAAKIRFRDP LPSAEFGRES 120 KKLRIVCEFH AKGWCIRGKT CRFLHIKDGP DAVVLKSEAL GREEPSSACI PPLQSEENPK 180 LNSETEKLVL LEDDTYLGAP TQEDRWSLRH KLYLDNYRNY GSPPVRGILS ARDSAYHGSS 240 SVTSHDNDCD TRVSCFGPTV DEIISKKSNI VQNDHRLADL PDSYTRHALP FCSSSRNSSA 300 HGPHKFLQSS LERHAYVSSA MQQSIPQASR FESDTLPSNR SFGEAEPAKF EATFSSFDWE 360 PSAPFRPCHE ITRSILLKEC GYNPTHDSTD KKDVQDIRVR FSHSDQGSSI KNVNVQSSIQ 420 REESVLNHVL AGDTVKDNIL SSSNDKVKHD KTMDGTILEV DDSGTKVDIE ADFKRGDHVQ 480 SESKAFKYFQ SALIESVKEL VKPFWREGFL SKDAHKLIVK KAVDKVLSTL QTHQIPSTEE 540 SVKLYLSSSQ PKLAKLVEGY LKIYGKT

Sequence ? help Back to Top

Protein Sequence Length: 567 aa Download sequence Send to blast

MGQSSNIFLQ KSVYMVKILE LDEHKDHRHS SSLTEGVFVK SIGDAKTSES SEKEGLYVND  60
VNATSTMANA SGENVSAIAS IMAETNHSAL EGVGNISPRL HAAKIRFRDP LPSAEFGRES  120
KKLRIVCEFH AKGWCIRGKT CRFLHIKDGP DAVVLKSEAL GREEPSSACI PPLQSEENPK  180
LNSETEKLVL LEDDTYLGAP TQEDRWSLRH KLYLDNYRNY GSPPVRGILS ARDSAYHGSS  240
SVTSHDNDCD TRVSCFGPTV DEIISKKSNI VQNDHRLADL PDSYTRHALP FCSSSRNSSA  300
HGPHKFLQSS LERHAYVSSA MQQSIPQASR FESDTLPSNR SFGEAEPAKF EATFSSFDWE  360
PSAPFRPCHE ITRSILLKEC GYNPTHDSTD KKDVQDIRVR FSHSDQGSSI KNVNVQSSIQ  420
REESVLNHVL AGDTVKDNIL SSSNDKVKHD KTMDGTILEV DDSGTKVDIE ADFKRGDHVQ  480
SESKAFKYFQ SALIESVKEL VKPFWREGFL SKDAHKLIVK KAVDKVLSTL QTHQIPSTEE  540
SVKLYLSSSQ PKLAKLVEGY LKIYGKT

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
TrEMBL	A0A4D8YZD5	0.0	A0A4D8YZD5_SALSN; Uncharacterized protein

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA3004	21	22

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G33835.1	1e-28	C3H family protein