PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SMil_00000123-RA_Salv
Organism
Salvia miltiorrhiza
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia
Family WRKY
Protein Properties Length: 261aa    MW: 28817.8 Da    PI: 7.1442
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SMil_00000123-RA_SalvgenomeNDCTCMView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY104.94.3e-33155211258
                            --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS CS
                   WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnh 58 
                            +Dgy+WrKYGqK vk+s+fprsYYrCt ++C+vkk++ers edp+vv++tYeg+H h
  SMil_00000123-RA_Salv 155 EDGYRWRKYGQKAVKNSPFPRSYYRCTNSKCMVKKRIERSFEDPSVVITTYEGQHSH 211
                            8*******************************************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.801.0E-32139212IPR003657WRKY domain
SuperFamilySSF1182903.14E-28146211IPR003657WRKY domain
PROSITE profilePS5081129.218149214IPR003657WRKY domain
SMARTSM007742.8E-38154213IPR003657WRKY domain
PfamPF031065.4E-26155211IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009414Biological Processresponse to water deprivation
GO:0009651Biological Processresponse to salt stress
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 261 aa     Download sequence    Send to blast
LLTNSTTTSS QFVQVMSGEE KKPDPDFAAA STWRSSDDDA GHHSYFFATT DDYKESSILS  60
EFGWNIPPDG GFADFPPIEP DLAASRADDY VAPVVEASAS NPSVSSSSSD DPPEKSSAAA  120
KPPPEVAGKA KKKGQKRIRQ PRFAFVTKSE VDHLEDGYRW RKYGQKAVKN SPFPRSYYRC  180
TNSKCMVKKR IERSFEDPSV VITTYEGQHS HYSVGYPRAG LVTQESNNLP YRPRLPHPPP  240
RLQEPSVGEG LLGDIVRNNG S
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A4e-261472111074Probable WRKY transcription factor 4
2lex_A4e-261472111074Probable WRKY transcription factor 4
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00067PBMTransfer from AT1G69310Download
Motif logo
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKM8231590.0KM823159.1 Salvia miltiorrhiza WRKY protein (WRKY36) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011070956.14e-82probable WRKY transcription factor 57 isoform X2
SwissprotQ9C9831e-67WRK57_ARATH; Probable WRKY transcription factor 57
TrEMBLA0A0D5Y9A80.0A0A0D5Y9A8_SALMI; WRKY protein
STRINGEMJ238129e-81(Prunus persica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA80312228
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G69310.22e-55WRKY DNA-binding protein 57
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Jiang Y,Qiu Y,Hu Y,Yu D
    Heterologous Expression of AtWRKY57 Confers Drought Tolerance in Oryza sativa.
    Front Plant Sci, 2016. 7: p. 145
    [PMID:26904091]
  3. Jiang Y,Yu D
    The WRKY57 Transcription Factor Affects the Expression of Jasmonate ZIM-Domain Genes Transcriptionally to Compromise Botrytis cinerea Resistance.
    Plant Physiol., 2016. 171(4): p. 2771-82
    [PMID:27268959]
  4. Huang KC,Lin WC,Cheng WH
    Salt hypersensitive mutant 9, a nucleolar APUM23 protein, is essential for salt sensitivity in association with the ABA signaling pathway in Arabidopsis.
    BMC Plant Biol., 2018. 18(1): p. 40
    [PMID:29490615]