PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | SMil_00000072-RA_Salv | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia
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Family | FAR1 | ||||||||
Protein Properties | Length: 355aa MW: 39924.6 Da PI: 9.1606 | ||||||||
Description | FAR1 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | FAR1 | 69.6 | 7.7e-22 | 43 | 117 | 1 | 89 |
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHe 88 +fY+ YA++vGF++r+ + ++s+ +g++++r+fvCskeg++++ +rtgC a ++v+k ++gkw+v+++++eHnHe SMil_00000072-RA_Salv 43 EFYSMYATQVGFKIRIGQLYRSRVDGSVISRRFVCSKEGFQTN--------------SRTGCPAFIRVQKVDSGKWVVANIKKEHNHE 116 6***************************************987..............589***************************9 PP FAR1 89 l 89 + SMil_00000072-RA_Salv 117 V 117 7 PP | |||||||
2 | FAR1 | 66.9 | 5.2e-21 | 194 | 268 | 1 | 89 |
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHe 88 kfY +YA+++GF++r+ + +sk++g+it+r+fvCskeg++++ +r+gC a ++++++++g+w+v++l++eHnH+ SMil_00000072-RA_Salv 194 KFYYAYATNMGFRIRIGQLFRSKHDGSITSRRFVCSKEGHQHP--------------SRVGCGAYMRIQRHESGRWVVDRLQKEHNHA 267 6**************************************9998..............4899**************************9 PP FAR1 89 l 89 l SMil_00000072-RA_Salv 268 L 268 8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03101 | 1.4E-17 | 43 | 117 | IPR004330 | FAR1 DNA binding domain |
Pfam | PF03101 | 2.0E-16 | 194 | 268 | IPR004330 | FAR1 DNA binding domain |
Sequence ? help Back to Top |
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Protein Sequence Length: 355 aa Download sequence Send to blast |
MTVRTKPAAL VVGISNGHQE NEGESKMEPH VGLEFNTAEE AQEFYSMYAT QVGFKIRIGQ 60 LYRSRVDGSV ISRRFVCSKE GFQTNSRTGC PAFIRVQKVD SGKWVVANIK KEHNHEVEAS 120 GEICPSRIQR KSFPTPRSST GGASRTGIRS HEDDSPSAVV DIKRLKKEEM DAVNGPSGEP 180 SKGLEFNSAN DAYKFYYAYA TNMGFRIRIG QLFRSKHDGS ITSRRFVCSK EGHQHPSRVG 240 CGAYMRIQRH ESGRWVVDRL QKEHNHALGS PLDPNRTVNG TPKGCREEGS SVLENLDLVE 300 TNGGLSLVKR GRESRIDNDW EEARNYIEAG TASLERYKLA FEIMQEGRRN FCWQN |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Putative transcription activator involved in regulating light control of development. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Up-regulated in hypocotyls by far-red light treatment. {ECO:0000269|PubMed:15591448}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011090830.1 | 0.0 | protein FAR1-RELATED SEQUENCE 7-like isoform X2 | ||||
Swissprot | Q9M8J3 | 1e-106 | FRS7_ARATH; Protein FAR1-RELATED SEQUENCE 7 | ||||
TrEMBL | A0A4D8Y5W2 | 0.0 | A0A4D8Y5W2_SALSN; Uncharacterized protein | ||||
STRING | Migut.N00138.1.p | 0.0 | (Erythranthe guttata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA7347 | 21 | 30 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G06250.1 | 1e-109 | FAR1-related sequence 7 |
Publications ? help Back to Top | |||
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