PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sme2.5_31683.1_g00001.1
Organism
Solanum melongena
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family HSF
Protein Properties Length: 167aa    MW: 19259.9 Da    PI: 6.249
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sme2.5_31683.1_g00001.1genomeEGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind271.1e-0813956102
                              HHHHTTEEE---SSBTTTTXTTSEEEEESX.XXXXXXXXXXXXXXXXX CS
             HSF_DNA-bind  56 QLnmYgFkkvkdeekkskskekiweFkhks.Fkkgkkellekikrkks 102
                              QLn+YgF+k++ e+         weF+++  F +g+ +ll++i+r+k 
  Sme2.5_31683.1_g00001.1   1 QLNTYGFRKIDPEK---------WEFANEDnFVRGQPHLLKNIHRRKP 39 
                              9**********999.........*****988**************985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.103.2E-8137IPR011991Winged helix-turn-helix DNA-binding domain
SuperFamilySSF467853.26E-7137IPR011991Winged helix-turn-helix DNA-binding domain
PfamPF004471.0E-6137IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 167 aa     Download sequence    Send to blast
QLNTYGFRKI DPEKWEFANE DNFVRGQPHL LKNIHRRKPV HSHSAQNLHG LSSPLTESER  60
QRYKEDIQKL KYENGNTTLE VVEQEDKTAV XGTATNVPTR INDVFWEQFL TENPGSVDAS  120
EVQSERKDND SKNNESKTVD SGKYWWNMRS VNGLAEQMGH LTPAEKT
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that specifically binds DNA sequence 5'-AGAAnnTTCT-3' known as heat shock promoter elements (HSE).
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754413e-91HG975441.1 Solanum pennellii chromosome ch02, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015063774.11e-45heat stress transcription factor A-4c
RefseqXP_015063775.11e-45heat stress transcription factor A-4c
SwissprotO494038e-28HFA4A_ARATH; Heat stress transcription factor A-4a
TrEMBLM1CRG08e-44M1CRG0_SOLTU; Uncharacterized protein
STRINGXP_009796383.14e-44(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA34482344
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G18880.13e-30heat shock transcription factor A4A
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]