PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sme2.5_30117.1_g00001.1
Organism
Solanum melongena
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family Trihelix
Protein Properties Length: 386aa    MW: 43877 Da    PI: 5.6765
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sme2.5_30117.1_g00001.1genomeEGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix69.75.6e-2252149185
                 trihelix   1 rWtkqevlaLiearremeerlrrgk............lkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkr.ts 73 
                              +Wt++ v++Li+++  ++++ + +             +kk++W+ vs+ m++ g+++sp+qC++k+++lnkrykk++++ +++ ++
  Sme2.5_30117.1_g00001.1  52 KWTDSVVRLLIQVVACVGDDGSLEGpgvglkrksaclQKKGKWKTVSRIMMSNGCHVSPQQCEDKFNDLNKRYKKLNDILGRGtSC 137
                              7**************8888888433355566667788**********************************************568 PP

                 trihelix  74 essstcpyfdql 85 
                               ++++ ++ d++
  Sme2.5_30117.1_g00001.1 138 AVVENPALMDSM 149
                              999988888877 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF138375.0E-1950176No hitNo description
Sequence ? help Back to Top
Protein Sequence    Length: 386 aa     Download sequence    Send to blast
DKAVGPTNVV NISNNPNVNM SDEDEPSFTE DGNGDNNGGA QRKKGSPWQR MKWTDSVVRL  60
LIQVVACVGD DGSLEGPGVG LKRKSACLQK KGKWKTVSRI MMSNGCHVSP QQCEDKFNDL  120
NKRYKKLNDI LGRGTSCAVV ENPALMDSMP QLSAKAKDTV KKILNSKHLF YREMCAYHNG  180
QKIPDCNDLE FPVHSLPAAA QCGKDHNGSQ GDEAEENDES DDDDDDESDD NHGDGDARKS  240
GDFDERVRRV EENGCFLPHL SGTENFLAEI NEFFQDPTKS QWEQRMWIKK RMLQLEEEKL  300
GIQAEAFELE KRQVKWQRFC RKKDREFEIE GLENKKLMLE NKHMALQLKH KEHEIDITKP  360
NISFNSAPLS LDRPRGRDQL DAARYH
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754510.0HG975451.1 Solanum pennellii chromosome ch12, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006365820.10.0PREDICTED: uncharacterized protein LOC102578195
TrEMBLA0A0V0IF560.0A0A0V0IF56_SOLCH; Putative ovule protein
TrEMBLA0A0V0IM550.0A0A0V0IM55_SOLCH; Putative ovule protein
TrEMBLM1C7950.0M1C795_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000612290.0(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA129131720
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G76870.12e-69