PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sme2.5_26729.1_g00001.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
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Family | NF-YC | ||||||||
Protein Properties | Length: 123aa MW: 14100.2 Da PI: 5.8277 | ||||||||
Description | NF-YC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NF-YC | 44.4 | 3.6e-14 | 1 | 43 | 10 | 53 |
NF-YC 10 iekatdfknhelPlarikkilkadedvkmisaeaPvllskacel 53 +e++ +fkn elP++ ikkilk+d+dv+m+ ae+P++l++ac Sme2.5_26729.1_g00001.1 1 MEQVDNFKN-ELPITHIKKILKSDKDVHMVFAESPIFLANACTT 43 799999998.7*******************************75 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.20.10 | 8.1E-9 | 4 | 41 | IPR009072 | Histone-fold |
SuperFamily | SSF47113 | 1.96E-5 | 8 | 44 | IPR009072 | Histone-fold |
Pfam | PF00808 | 8.9E-6 | 10 | 43 | IPR003958 | Transcription factor CBF/NF-Y/archaeal histone domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046982 | Molecular Function | protein heterodimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 123 aa Download sequence Send to blast |
MEQVDNFKNE LPITHIKKIL KSDKDVHMVF AESPIFLANA CTTIREARDI ETMTLNKLVG 60 NLKTYEMNME DQKKQVAAAE KLLALKAASD DEVSDPDEDQ IAFLAKNFKK FLRKGKEKDN 120 REI |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA26 | 2 | 3 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G50480.1 | 5e-12 | nuclear factor Y, subunit C6 |