PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | AT5G50480.1 | ||||||||
Common Name | MBA10.3, NFYC6, NF-YC6 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
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Family | NF-YC | ||||||||
Protein Properties | Length: 202aa MW: 22009.5 Da PI: 4.3431 | ||||||||
Description | nuclear factor Y, subunit C6 | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NF-YC | 174.8 | 8.7e-55 | 35 | 134 | 1 | 100 |
NF-YC 1 qlksfwekqiekatdfknhelPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtdifdflvdivpr 98 ql+++w++q+e+++dfkn++lPlarikki+kad+dv+m+saeaP++++kace+fi++lt+rswl+aeenkr+tl+ksdi++av++++++dfl+d+vp+ AT5G50480.1 35 QLRNYWIEQMETVSDFKNRQLPLARIKKIMKADPDVHMVSAEAPIIFAKACEMFIVDLTMRSWLKAEENKRHTLQKSDISNAVASSFTYDFLLDVVPK 132 89************************************************************************************************ PP NF-YC 99 de 100 de AT5G50480.1 133 DE 134 97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF47113 | 7.21E-32 | 4 | 126 | IPR009072 | Histone-fold |
Pfam | PF00808 | 4.7E-19 | 54 | 117 | IPR003958 | Transcription factor CBF/NF-Y/archaeal histone domain |
Gene3D | G3DSA:1.10.20.10 | 4.2E-33 | 55 | 132 | IPR009072 | Histone-fold |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0046982 | Molecular Function | protein heterodimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 202 aa Download sequence Send to blast |
MAENNNNNGD NMNNDNHQQP PSYSQLPPMA SSNPQLRNYW IEQMETVSDF KNRQLPLARI 60 KKIMKADPDV HMVSAEAPII FAKACEMFIV DLTMRSWLKA EENKRHTLQK SDISNAVASS 120 FTYDFLLDVV PKDESIATAD PGFVAMPHPD GGGVPQYYYP PGVVMGTPMV GSGMYAPSQA 180 WPAAAGDGED DAEDNGGNGG GN |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5g49_B | 3e-39 | 42 | 132 | 5 | 95 | NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT C-3 |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
At.29728 | 0.0 | seed |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | E-value | ||||
GEO | 145359086 | 0.0 | ||||
Genevisible | 248504_at | 0.0 | ||||
Expression Atlas | AT5G50480 | - | ||||
AtGenExpress | AT5G50480 | - | ||||
ATTED-II | AT5G50480 | - |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in flowers and siliques. {ECO:0000269|PubMed:11250072}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Stimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters. {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | AT5G50480.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Interaction ? help Back to Top | ||||||
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Source | Intact With | |||||
BioGRID | AT1G09030, AT1G17590, AT1G21970, AT1G30500, AT1G72830 | |||||
IntAct | Search Q9FGP7 |
Phenotype -- Mutation ? help Back to Top | ||||||
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Source | ID | |||||
T-DNA Express | AT5G50480 |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AB025619 | 0.0 | AB025619.1 Arabidopsis thaliana genomic DNA, chromosome 5, P1 clone:MBA10. | |||
GenBank | BT014783 | 0.0 | BT014783.1 Arabidopsis thaliana At5g50480 gene, complete cds. | |||
GenBank | BT015006 | 0.0 | BT015006.1 Arabidopsis thaliana At5g50480 mRNA, complete cds. | |||
GenBank | CP002688 | 0.0 | CP002688.1 Arabidopsis thaliana chromosome 5 sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | NP_199859.1 | 1e-150 | nuclear factor Y, subunit C6 | ||||
Swissprot | Q9FGP7 | 1e-151 | NFYC6_ARATH; Nuclear transcription factor Y subunit C-6 | ||||
TrEMBL | A0A384KFQ7 | 1e-148 | A0A384KFQ7_ARATH; NF-YC6 | ||||
TrEMBL | C0SVT2 | 1e-148 | C0SVT2_ARATH; Uncharacterized protein At5g50480 (Fragment) | ||||
STRING | AT5G50480.1 | 1e-149 | (Arabidopsis thaliana) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM478 | 28 | 160 | Representative plant | OGRP315 | 17 | 117 |
Link Out ? help Back to Top | |
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Phytozome | AT5G50480.1 |
Entrez Gene | 835116 |
iHOP | AT5G50480 |
wikigenes | AT5G50480 |