PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sme2.5_24775.1_g00001.1
Organism
Solanum melongena
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family B3
Protein Properties Length: 283aa    MW: 32845.4 Da    PI: 7.1194
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sme2.5_24775.1_g00001.1genomeEGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B348.81.2e-1526118199
                              EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTE.EEE-TTHHHHHHHHT--TT-EEEEEE- CS
                       B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgr.yvltkGWkeFvkangLkegDfvvFkld 85 
                              ffk++   +   +++l++p kf++ ++++++   + +l+ +sg++W v++  +++ +  yv+ +GW+ Fvk++ L++ D +vFk+d
  Sme2.5_24775.1_g00001.1  26 FFKIM---MGDFRRILRIPQKFVTCFKNSHKLLGQKILTGPSGNTWLVEV--KRTEEDdYVFCNGWEIFVKDHCLEDADLLVFKMD 106
                              56666...4455667*******96665555555677889***********..5555555*************************98 PP

                              SSSEE..EEEEE-S CS
                       B3  86 grsefelvvkvfrk 99 
                              g s f   v++f++
  Sme2.5_24775.1_g00001.1 107 GFSAF--DVMIFDA 118
                              87888..8988886 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.104.6E-1922121IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019369.61E-1923124IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086312.5923119IPR003340B3 DNA binding domain
SMARTSM010191.8E-1026119IPR003340B3 DNA binding domain
PfamPF023621.3E-1226118IPR003340B3 DNA binding domain
CDDcd100177.70E-1726117No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 283 aa     Download sequence    Send to blast
MATMCERCKV LEKQKYWEEF HKRHKFFKIM MGDFRRILRI PQKFVTCFKN SHKLLGQKIL  60
TGPSGNTWLV EVKRTEEDDY VFCNGWEIFV KDHCLEDADL LVFKMDGFSA FDVMIFDASA  120
CEKEGTFFVK KDGNPCKHPE EVTDEHTSEH QSSEDEPSNE DGDDDDDMDE EDNIHEPTRG  180
LKSSRGKEYQ FQSSQPGNGK KMKKILVAKQ DNRKRKCLSM SSLKINVEPE EKRPMFSNGR  240
RVPEKEKMKV HHLASRHTSS VPSLLMTMQP THVYRGQLGL SAL
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754411e-161HG975441.1 Solanum pennellii chromosome ch02, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006338757.11e-168PREDICTED: B3 domain-containing protein REM16-like
TrEMBLA0A0V0I0F91e-167A0A0V0I0F9_SOLCH; Putative B3 domain-containing protein REM16-like
STRINGSolyc02g090170.2.11e-163(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA136031216
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G33280.12e-25B3 family protein