PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Sme2.5_20245.1_g00001.1

Organism

Solanum melongena

Taxonomic ID

4111

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum

Family

GRAS

Protein Properties

Length: 155aa MW: 17262.6 Da PI: 6.6294

Description

GRAS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Sme2.5_20245.1_g00001.1	genome	EGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GRAS	139.3	4.1e-43	1	155	38	198
GRAS 38 mqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshltaNqaIleavegeervHiiDfdisqGl 123 m++ a+yf+eAL+++++r + p +++ns++++ k+ +e + +lkf+h+taNq Ilea++ ++rvH+iDf+++qG Sme2.5_20245.1_g00001.1 1 MKKEATYFAEALHHKIHR-------TNPQDIVESSNSIDQFL-SKIIYEDCLFLKFAHVTANQSILEAFAYSKRVHVIDFSLNQGS 78 6788************.......22223333335666644.5899999******************************** PP GRAS 124 QWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakrledleleeLrvkp 198 QW a+lqaLa Rp+gpp++ + g+g ++ + s+ l+e+g++La++Ae++gv+fef+ +v+++l+dle +L+++p Sme2.5_20245.1_g00001.1 79 QWSAFLQALALRPGGPPTFPLKGIGGHSRTddSTYGLQEVGSKLAQLAESVGVEFEFHGFVVRTLADLEAPMLNIRP 155 ********************98777678999************************************9875 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03514	1.4E-40	1	155	IPR005202	Transcription factor GRAS
PROSITE profile	PS50985	30.711	1	155	IPR005202	Transcription factor GRAS

Sequence ? help Back to Top
Protein Sequence Length: 155 aa Download sequence Send to blast
MKKEATYFAE ALHHKIHRTN PQDIVESSNS IDQFLSKIIY EDCLFLKFAH VTANQSILEA 60 FAYSKRVHVI DFSLNQGSQW SAFLQALALR PGGPPTFPLK GIGGHSRTDD STYGLQEVGS 120 KLAQLAESVG VEFEFHGFVV RTLADLEAPM LNIRP

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5b3g_A	6e-19	2	154	57	210	Protein SCARECROW
5hyz_A	6e-19	2	135	41	180	GRAS family transcription factor containing protein, expressed
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcriptional regulator that acts as a repressor of the gibberellin (GA) signaling pathway. Probably acts by participating in large multiprotein complexes that repress transcription of GA-inducible genes. Upon GA application, it is degraded by the proteasome, allowing the GA signaling pathway (By similarity). Its degradation is not essential for germination. {ECO:0000250, ECO:0000269\|PubMed:15347801}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004249633.3	1e-76	DELLA protein GAI
Swissprot	Q7Y1B6	3e-55	GAI_SOLLC; DELLA protein GAI
TrEMBL	A0A3Q7IN05	1e-71	A0A3Q7IN05_SOLLC; Uncharacterized protein
STRING	Solyc10g086380.1.1	5e-76	(Solanum lycopersicum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA12864	11	19

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G01570.1	2e-46	GRAS family protein

Publications ? help Back to Top
Nir I, et al. The Tomato DELLA Protein PROCERA Acts in Guard Cells to Promote Stomatal Closure. Plant Cell, 2017. 29(12): p. 3186-3197 [PMID:29150547]