PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sme2.5_19957.1_g00001.1
Organism
Solanum melongena
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family B3
Protein Properties Length: 302aa    MW: 33784.8 Da    PI: 9.7985
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sme2.5_19957.1_g00001.1genomeEGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B352.49.4e-1710861697
                             EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE CS
                       B3 16 lvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvf 97
                              v+p k ae+  +k   +  ++l+ +sg +W+v+l     +++  l++GWkeFv+a++L+e+D v+Fk++g+s+f   v +f
  Sme2.5_19957.1_g00001.1 10 QVIPQKIAEKLRNK-IDEAYVSLTGPSGATWKVEL--AAIGDTLSLKNGWKEFVDAHRLEENDLVIFKYVGSSQF--DVWMF 86
                             59******999433.34568***************..999999****************************9999..66665 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5086314.156189IPR003340B3 DNA binding domain
CDDcd100171.18E-14387No hitNo description
Gene3DG3DSA:2.40.330.101.2E-17587IPR015300DNA-binding pseudobarrel domain
SMARTSM010191.8E-10589IPR003340B3 DNA binding domain
SuperFamilySSF1019365.89E-18587IPR015300DNA-binding pseudobarrel domain
PfamPF023626.5E-141085IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.101.2E-8229298IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019362.55E-8233298IPR015300DNA-binding pseudobarrel domain
CDDcd100171.36E-7233298No hitNo description
PROSITE profilePS508637.19234302IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 302 aa     Download sequence    Send to blast
MLNTYQKTFQ VIPQKIAEKL RNKIDEAYVS LTGPSGATWK VELAAIGDTL SLKNGWKEFV  60
DAHRLEENDL VIFKYVGSSQ FDVWMFDGQS SCAKEASFFL TTCEHPDLPS GSRTKRPRAV  120
RNDTTNDVSE APAKKKSKAS TPALHSSKSS SDEYEATTTP ETSKSSTYEH YTFPERTKSK  180
FASATTSSAQ GPRRARTNLR PREIKSTSAR TGENTSYQQS ALDLATVAAT PNSCVVVLKR  240
SHVTGPYYMT FPSEWARIHL PHKDLDVTLQ NNEKTWKANF TFTGRSGALG GDWKRFLHIH  300
WS
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA13043817
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G33280.11e-28B3 family protein