PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sme2.5_18444.1_g00001.1
Organism
Solanum melongena
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family WRKY
Protein Properties Length: 303aa    MW: 34419.6 Da    PI: 9.8814
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sme2.5_18444.1_g00001.1genomeEGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY70.62.1e-22166223259
                              --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
                     WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                              +D+++W K+GqK  kg +fpr+YY+C+ + C++kk +e+s ++++++ + Y+ge  h+
  Sme2.5_18444.1_g00001.1 166 NDKWAWHKFGQKLLKGFPFPRNYYKCSAKLCKAKKTIEKSPTNENYFLVSYSGERSHD 223
                              8*****************************************************9996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5081124.019160225IPR003657WRKY domain
Gene3DG3DSA:2.20.25.804.4E-20162225IPR003657WRKY domain
SuperFamilySSF1182902.35E-18163225IPR003657WRKY domain
SMARTSM007744.8E-18165224IPR003657WRKY domain
PfamPF031067.5E-16166222IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 303 aa     Download sequence    Send to blast
CNRFLMQDSY YSTFARSPQR SQSAVCLSLR VRDAGALICR ADTAFTPHSQ MSYPHCLSSP  60
SIIMLSYLSF GLTHLGRLGE CHHTWISVRD SQQNFLAASP TTVTCVVTTT ITPPEWIDIQ  120
QQQHMMHDNV DPYLTLPVKT PLIKTNKGKN QPIRVFYEVL LEELTNDKWA WHKFGQKLLK  180
GFPFPRNYYK CSAKLCKAKK TIEKSPTNEN YFLVSYSGER SHDPPIYPRP LIFYNSSSKY  240
KLPRGINIVP KALSVNTSSV SSSKRAKRSK IDVSSICPTT TTLKIESNNE MVKAVVDENV  300
KRN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ayd_A6e-14155225474WRKY transcription factor 1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015158586.13e-68PREDICTED: probable WRKY transcription factor 27
TrEMBLM1DN192e-69M1DN19_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000916263e-70(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA36681345
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G52830.18e-21WRKY DNA-binding protein 27