PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sme2.5_17209.1_g00001.1
Organism
Solanum melongena
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family C3H
Protein Properties Length: 319aa    MW: 35909.8 Da    PI: 7.0588
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sme2.5_17209.1_g00001.1genomeEGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH22.71.7e-073454526
                             --SGGGGTS--TTTTT-SS-SS CS
                  zf-CCCH  5 lCrffartGtCkyGdrCkFaHg 26
                              C ++++ G C yG+rC++ H+
  Sme2.5_17209.1_g00001.1 34 VCTYYQK-GLCAYGSRCRYEHV 54
                             5******.***********997 PP
2zf-CCCH24.54.7e-08141163326
                              S---SGGGGTS--TTTTT-SS-SS CS
                  zf-CCCH   3 telCrffartGtCkyGdrCkFaHg 26 
                              +++C  fa+ G C++G++C+++Hg
  Sme2.5_17209.1_g00001.1 141 RSICA-FAAAGNCPRGENCPYIHG 163
                              56788.*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010312.117128IPR000571Zinc finger, CCCH-type
SMARTSM003560.006227IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.7E-6426IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.1452956IPR000571Zinc finger, CCCH-type
SMARTSM003560.00123055IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.57E-53253IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.103.2E-43453IPR000571Zinc finger, CCCH-type
PfamPF006425.8E-53454IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.986138165IPR000571Zinc finger, CCCH-type
SMARTSM003561.9E-4139164IPR000571Zinc finger, CCCH-type
SuperFamilySSF902293.66E-5140163IPR000571Zinc finger, CCCH-type
PfamPF006421.4E-5141163IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.1E-4143163IPR000571Zinc finger, CCCH-type
SuperFamilySSF578501.33E-12200273No hitNo description
Gene3DG3DSA:3.30.40.103.0E-10202266IPR013083Zinc finger, RING/FYVE/PHD-type
CDDcd001620.00138206266No hitNo description
PROSITE profilePS5008912.475207265IPR001841Zinc finger, RING-type
SMARTSM001844.1E-7207264IPR001841Zinc finger, RING-type
PfamPF000974.1E-7207264IPR018957Zinc finger, C3HC4 RING-type
PROSITE patternPS005180231240IPR017907Zinc finger, RING-type, conserved site
SMARTSM0035613294318IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010312.202294319IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 319 aa     Download sequence    Send to blast
MKEAVLCKFF VHGACLKGEY CGFSHDWKDP PNNVCTYYQK GLCAYGSRCR YEHVKVSEQP  60
SLPSSSAPDQ HLLSAPPPTT VSPGMLTDGA EILSGISSEY LTSGPPFYPP DQPVWGENSE  120
HHDAADIDNI VELKIMNPAD RSICAFAAAG NCPRGENCPY IHGDLCPVCS KHCLHPFRPQ  180
EREEHMKTCE KRQKRLDLLK YSQEIECSVC LERVLSKTTA AERKFGILFE CDHPFCISCI  240
RHWRSGSGSS EIDVNSTFRT CPVCRKLSYF VIPSISWYST IEEKKNIIDS YKAKLRTIDC  300
KHYDFGNGTC PFGNSCFYK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754400.0HG975440.1 Solanum pennellii chromosome ch01, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015063183.10.0E3 ubiquitin-protein ligase makorin isoform X1
SwissprotE0X9N41e-133C3H69_ARATH; Putative RING-type E3 ubiquitin transferase C3H69
TrEMBLA0A3Q7EIT00.0A0A3Q7EIT0_SOLLC; Uncharacterized protein
STRINGSolyc01g087030.2.10.0(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA33862149
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G08505.21e-128C3H family protein
Publications ? help Back to Top
  1. Wang CT,Ho CH,Hseu MJ,Chen CM
    The subtelomeric region of the Arabidopsis thaliana chromosome IIIR contains potential genes and duplicated fragments from other chromosomes.
    Plant Mol. Biol., 2010. 74(1-2): p. 155-66
    [PMID:20652368]