PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Sme2.5_17021.1_g00001.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
|
||||||||
Family | M-type_MADS | ||||||||
Protein Properties | Length: 213aa MW: 24325.1 Da PI: 8.9901 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 48.8 | 8.8e-16 | 6 | 45 | 3 | 42 |
--SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-T CS SRF-TF 3 ienksnrqvtfskRrngilKKAeELSvLCdaevaviifss 42 ien+ r+v++ kR +g+l KA EL +LCdae+ ii+s+ Sme2.5_17021.1_g00001.1 6 IENENERKVSYKKREKGLLTKADELGILCDAEITAIIYSP 45 9*************************************98 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00432 | 4.5E-10 | 1 | 55 | IPR002100 | Transcription factor, MADS-box |
PROSITE profile | PS50066 | 16.301 | 1 | 44 | IPR002100 | Transcription factor, MADS-box |
CDD | cd00266 | 9.34E-18 | 2 | 79 | No hit | No description |
SuperFamily | SSF55455 | 2.88E-17 | 2 | 89 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 5.4E-16 | 6 | 50 | IPR002100 | Transcription factor, MADS-box |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 213 aa Download sequence Send to blast |
MKFALIENEN ERKVSYKKRE KGLLTKADEL GILCDAEITA IIYSPYKNEP TVFPNHGSAV 60 NTLTKFKELP ADYRSKTMVI RDGFTMKRIQ KLNEKLIKVR KENRVKENTN AMYEVLKEKY 120 IPTDMHPCDV NDLCYVIKKN LKQVREAMKK KIGEEGYTST FPQSIVGPMV PSGTKIEGPN 180 DPLLSHTGLE LSMIPPSSPL TFFSGINYER DED |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_006341870.1 | 5e-72 | PREDICTED: agamous-like MADS-box protein AGL80 | ||||
TrEMBL | M1D936 | 2e-83 | M1D936_SOLTU; Uncharacterized protein | ||||
STRING | PGSC0003DMT400085256 | 4e-84 | (Solanum tuberosum) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA1329 | 10 | 40 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT5G26630.1 | 2e-24 | M-type_MADS family protein |