PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sme2.5_16526.1_g00002.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
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Family | BES1 | ||||||||
Protein Properties | Length: 159aa MW: 17197.5 Da PI: 10.0914 | ||||||||
Description | BES1 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF822 | 214.9 | 1.9e-66 | 9 | 153 | 1 | 149 |
DUF822 1 ggsgrkptwkErEnnkrRERrRRaiaakiyaGLRaqGnyklpkraDnneVlkALcreAGwvvedDGttyrkgskpleeaeaagssa 86 g+sgr ptwkErEnnkrRERrRRaiaaki++GLR qGn+klpk++DnneVlkALc eAGwvvedDGttyrkg++p+ + +s Sme2.5_16526.1_g00002.1 9 GSSGRLPTWKERENNKRRERRRRAIAAKIFTGLRTQGNFKLPKHCDNNEVLKALCFEAGWVVEDDGTTYRKGQRPP-PIVNGCASM 93 689*************************************************************************.88999999* PP DUF822 87 saspesslqsslkssalaspvesysaspksssfpspssldsislasaasllpvlsvlslvsss 149 ++s +ss+q s+ ss+++spv+sy+asp+sssfpsps+ d ++ +++lp+l++l++++s+ Sme2.5_16526.1_g00002.1 94 NISACSSIQPSPMSSSFPSPVPSYHASPTSSSFPSPSHCDGNPP---SHILPFLHNLASIPST 153 ****************************************9987...599****999998876 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF05687 | 5.8E-62 | 10 | 133 | IPR008540 | BES1/BZR1 plant transcription factor, N-terminal |
Sequence ? help Back to Top |
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Protein Sequence Length: 159 aa Download sequence Send to blast |
MTACAGGGGS SGRLPTWKER ENNKRRERRR RAIAAKIFTG LRTQGNFKLP KHCDNNEVLK 60 ALCFEAGWVV EDDGTTYRKG QRPPPIVNGC ASMNISACSS IQPSPMSSSF PSPVPSYHAS 120 PTSSSFPSPS HCDGNPPSHI LPFLHNLASI PSTLPPLRI |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5zd4_A | 1e-25 | 13 | 85 | 372 | 444 | Maltose-binding periplasmic protein,Protein BRASSINAZOLE-RESISTANT 1 |
5zd4_B | 1e-25 | 13 | 85 | 372 | 444 | Maltose-binding periplasmic protein,Protein BRASSINAZOLE-RESISTANT 1 |
5zd4_C | 1e-25 | 13 | 85 | 372 | 444 | Maltose-binding periplasmic protein,Protein BRASSINAZOLE-RESISTANT 1 |
5zd4_D | 1e-25 | 13 | 85 | 372 | 444 | Maltose-binding periplasmic protein,Protein BRASSINAZOLE-RESISTANT 1 |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT013592 | 0.0 | BT013592.1 Lycopersicon esculentum clone 132355R, mRNA sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_016557829.1 | 5e-73 | PREDICTED: BES1/BZR1 homolog protein 2-like | ||||
Swissprot | Q94A43 | 5e-45 | BEH2_ARATH; BES1/BZR1 homolog protein 2 | ||||
TrEMBL | A0A1U8FPZ6 | 1e-71 | A0A1U8FPZ6_CAPAN; BES1/BZR1 homolog protein 2-like | ||||
STRING | XP_009765795.1 | 2e-60 | (Nicotiana sylvestris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA6204 | 21 | 30 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G36780.1 | 8e-33 | BES1/BZR1 homolog 2 |