PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Sme2.5_15948.1_g00003.1

Organism

Solanum melongena

Taxonomic ID

4111

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum

Family

ZF-HD

Protein Properties

Length: 509aa MW: 56671.2 Da PI: 6.3182

Description

ZF-HD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Sme2.5_15948.1_g00003.1	genome	EGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	ZF-HD_dimer	43.4	7.9e-14	310	341	27	59
ZF-HD_dimer 27 EfmpsegeegtaaalkCaACgCHRnFHRrevee 59 Ef+ps geegt+ alkCaAC CH nFHR+e ++ Sme2.5_15948.1_g00003.1 310 EFLPS-GEEGTPGALKCAACSCHQNFHRKEIDD 341 9*9.999******************9886 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF14111	7.3E-7	182	259	IPR025558	Domain of unknown function DUF4283
ProDom	PD125774	7.0E-8	310	340	IPR006456	ZF-HD homeobox protein, Cys/His-rich dimerisation domain
Pfam	PF04770	1.4E-12	310	339	IPR006456	ZF-HD homeobox protein, Cys/His-rich dimerisation domain

Sequence ? help Back to Top
Protein Sequence Length: 509 aa Download sequence Send to blast
MRNRSVTCIL PCSGHGIDEI NQKMDFCSRM KSYCTDSEDG VSSPIKCESS KLRSSVGISC 60 RGFSGLSSAP CGTAGRVPSV MYESSSMCST DSVPLRGTCL NHNNLKSYSR MWNYGSKSTS 120 EATDLACETL SQPLYALSIV EHHENQKSGP PMEVRHSNYM EYPTVTFPRK SGESLDEPDM 180 DSSIGNFSYR RPKMKQIRAD FRAQNPLNGQ VKIRHCTYRQ VLLLFTNEED YYTVLYRKTF 240 ILAGALMQIS WPSPDFHHEA KQNIDPDFRL SDANPVNWST DTSKLHPCIN GLPAPAIDEK 300 SMSLQLPAVE FLPSGEEGTP GALKCAACSC HQNFHRKEID DHQQMADVGS HSTFSQLRNN 360 SSCGSIQKLA PLSLPTQQLQ QYHHNFSNSC SPSSLVNSLE LISQPPSPKS RQGLERIEPS 420 SIQPSDSYEM VNHDTMQIGK QQEYSWRDNN RAPDNIPLDF PACSSRCQSQ SVFTDEFPHL 480 DIIDNLLGEE HGTVQTSMSN SGFQSLSNG

Sequence ? help Back to Top

Protein Sequence Length: 509 aa Download sequence Send to blast

MRNRSVTCIL PCSGHGIDEI NQKMDFCSRM KSYCTDSEDG VSSPIKCESS KLRSSVGISC  60
RGFSGLSSAP CGTAGRVPSV MYESSSMCST DSVPLRGTCL NHNNLKSYSR MWNYGSKSTS  120
EATDLACETL SQPLYALSIV EHHENQKSGP PMEVRHSNYM EYPTVTFPRK SGESLDEPDM  180
DSSIGNFSYR RPKMKQIRAD FRAQNPLNGQ VKIRHCTYRQ VLLLFTNEED YYTVLYRKTF  240
ILAGALMQIS WPSPDFHHEA KQNIDPDFRL SDANPVNWST DTSKLHPCIN GLPAPAIDEK  300
SMSLQLPAVE FLPSGEEGTP GALKCAACSC HQNFHRKEID DHQQMADVGS HSTFSQLRNN  360
SSCGSIQKLA PLSLPTQQLQ QYHHNFSNSC SPSSLVNSLE LISQPPSPKS RQGLERIEPS  420
SIQPSDSYEM VNHDTMQIGK QQEYSWRDNN RAPDNIPLDF PACSSRCQSQ SVFTDEFPHL  480
DIIDNLLGEE HGTVQTSMSN SGFQSLSNG

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006354529.1	1e-145	PREDICTED: uncharacterized protein LOC102604540
Refseq	XP_010326742.1	1e-145	uncharacterized protein LOC101258410 isoform X1
Refseq	XP_010326743.1	1e-147	uncharacterized protein LOC101258410 isoform X3
Refseq	XP_025888569.1	1e-147	uncharacterized protein LOC101258410 isoform X3
TrEMBL	A0A0V0IT95	1e-146	A0A0V0IT95_SOLCH; Putative ovule protein
STRING	PGSC0003DMT400044270	1e-145	(Solanum tuberosum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA14101	8	10

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G75240.1	4e-11	homeobox protein 33