PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sme2.5_15948.1_g00001.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
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Family | ZF-HD | ||||||||
Protein Properties | Length: 714aa MW: 79758.2 Da PI: 8.4049 | ||||||||
Description | ZF-HD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | ZF-HD_dimer | 100.2 | 1.5e-31 | 533 | 588 | 3 | 59 |
ZF-HD_dimer 3 kvrYkeClkNhAaslGghavDGCgEfmpsegeegtaaalkCaACgCHRnFHRrevee 59 ++rY eClkNhAas+GghavDGC+Efmps geegt+ alkCaAC CH nFHR+e ++ Sme2.5_15948.1_g00001.1 533 SIRYGECLKNHAASMGGHAVDGCREFMPS-GEEGTPGALKCAACSCHQNFHRKEIDD 588 789*************************9.999********************9886 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF14111 | 1.0E-7 | 286 | 363 | IPR025558 | Domain of unknown function DUF4283 |
Pfam | PF04770 | 1.4E-29 | 534 | 586 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
ProDom | PD125774 | 3.0E-19 | 534 | 587 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
TIGRFAMs | TIGR01566 | 4.1E-27 | 535 | 586 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
PROSITE profile | PS51523 | 26.399 | 536 | 585 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
Sequence ? help Back to Top |
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Protein Sequence Length: 714 aa Download sequence Send to blast |
MQTPPTPATK NSQRRCDADD DEQTTTTRMT TTKDTDADDD EEHRRRRRRR RRQRRRAQTQ 60 ATTTTTTTTK DTNADDDEEH RRRRRRRGRR RRSTQTQATT QTTQTTTTET MTTQTTRKRV 120 VTLVGGRDER LGRWVVEEGD KVGHVVLVGG VVGWGECTGW LGVEALWLVG VRVRVGEMNP 180 STLLGSALEW VGGGVCVELR FGFRQEDGVV GERGERWGRW VVEEGDEVGY AVRVGVRVGD 240 FIVELDCKGF FMQKGGNHWE RPPMEVRHSN YMGYPTDTFP RKSGESLVSD YKLTLIGNFS 300 YRRPKMKQIR ADFRAQNPLN GQVKIRHCTY RQVLLLFTNE EDYYTVLYKK TFILAGALMQ 360 ISCPSPDFHH EAKQNIDPDF RLSDANPVNC STDTSRLHPC INGLPAPATD EKPMSLQLPA 420 VSQCLSVPLL HPPLPLLANS VSVASRLCAD RLTASGIYVP LSYPKGIVGS PSFGRNEQAV 480 RGNTFPSPGQ AVNRLNLAQQ RNQLNLYKEP NMTSRIAQSQ PPSTTSVSGT TSSIRYGECL 540 KNHAASMGGH AVDGCREFMP SGEEGTPGAL KCAACSCHQN FHRKEIDDHQ QMADVGSHST 600 FSQLRNNSSC GSIQKLAPLS LPTQQLQQYH HNFSNSCSLS SLIGKQQEYS WRDNNRAPDN 660 IPLDFPACSS RCQSQSVFTD EFPHLDIIDN LLGEEHGTVQ TSMSNSGFQS LSNG |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 43 | 51 | RRRRRRRRR |
2 | 44 | 51 | RRRRRRRR |
3 | 50 | 55 | RRQRRR |
4 | 80 | 86 | RRRRRRR |
5 | 80 | 90 | RRRRRRRGRRR |
6 | 81 | 88 | RRRRRRGR |
7 | 81 | 89 | RRRRRRGRR |
8 | 82 | 89 | RRRRRGRR |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | HG975448 | 0.0 | HG975448.1 Solanum pennellii chromosome ch09, complete genome. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010326743.1 | 0.0 | uncharacterized protein LOC101258410 isoform X3 | ||||
Refseq | XP_015086489.1 | 0.0 | uncharacterized protein LOC107029567 isoform X1 | ||||
Refseq | XP_015086490.1 | 0.0 | uncharacterized protein LOC107029567 isoform X2 | ||||
Refseq | XP_025888569.1 | 0.0 | uncharacterized protein LOC101258410 isoform X3 | ||||
TrEMBL | A0A3Q7I763 | 0.0 | A0A3Q7I763_SOLLC; Uncharacterized protein | ||||
STRING | Solyc09g089550.2.1 | 0.0 | (Solanum lycopersicum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA14101 | 8 | 10 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G74660.1 | 3e-24 | mini zinc finger 1 |