PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Sme2.5_14251.1_g00003.1

Organism

Solanum melongena

Taxonomic ID

4111

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum

Family

WRKY

Protein Properties

Length: 153aa MW: 17254.6 Da PI: 8.3021

Description

WRKY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Sme2.5_14251.1_g00003.1	genome	EGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRKY	40.5	5.3e-13	11	50	20	59
S-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 20 fprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 +YY+C+ + C++kk +e+s ++++++ + Y+geH h+ Sme2.5_14251.1_g00003.1 11 KNMNYYKCSAKLCKAKKTIEKSPTNENYFLVSYSGEHGHD 50 5568**********************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00774	2.1E-5	10	51	IPR003657	WRKY domain
Pfam	PF03106	1.1E-8	10	49	IPR003657	WRKY domain
SuperFamily	SSF118290	7.85E-10	11	52	IPR003657	WRKY domain
Gene3D	G3DSA:2.20.25.80	1.5E-10	12	52	IPR003657	WRKY domain
PROSITE profile	PS50811	13.712	14	52	IPR003657	WRKY domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 153 aa Download sequence Send to blast
MIPWSIPRPK KNMNYYKCSA KLCKAKKTIE KSPTNENYFL VSYSGEHGHD PPTYPRPLIF 60 YNSSSKYKLP RGINIVPKAL SVNTSSVSSS KRAKCSKIDV FSICPTATTL KIESNNEMVN 120 AVVENKNDVE EEENVNEDII MEFEEHQGVT SST

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015158586.1	2e-49	PREDICTED: probable WRKY transcription factor 27
TrEMBL	M1DIH8	3e-48	M1DIH8_SOLTU; Uncharacterized protein
STRING	PGSC0003DMT400089604	6e-49	(Solanum tuberosum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA3668	13	45

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G52830.1	3e-08	WRKY DNA-binding protein 27