PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sme2.5_14019.1_g00001.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
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Family | WRKY | ||||||||
Protein Properties | Length: 241aa MW: 27645.2 Da PI: 7.9795 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 77 | 2.2e-24 | 95 | 152 | 2 | 59 |
--SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 +D+++W K+GqK kg +fpr+YY+C+ + C++kk +e+s ++++++ + Y+geH h+ Sme2.5_14019.1_g00001.1 95 NDKWAWHKFGQKLLKGFPFPRNYYKCSAKLCEAKKTIEKSPTNENYFLVSYSGEHSHD 152 8********************************************************7 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50811 | 25.247 | 89 | 154 | IPR003657 | WRKY domain |
Gene3D | G3DSA:2.20.25.80 | 2.4E-22 | 90 | 154 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 1.31E-20 | 92 | 154 | IPR003657 | WRKY domain |
SMART | SM00774 | 2.4E-21 | 94 | 153 | IPR003657 | WRKY domain |
Pfam | PF03106 | 2.3E-18 | 95 | 152 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 241 aa Download sequence Send to blast |
MDQNNNQQLY FHPIQPTQFS QQNFLAASPT TVTCVPTTTT TSPEWIDIQQ QQHMMHDNVD 60 PDLTLPMKTP LIKTYKGKNQ PVRVFYEVLL EELTNDKWAW HKFGQKLLKG FPFPRNYYKC 120 SAKLCEAKKT IEKSPTNENY FLVSYSGEHS HDPPTYRRPL IFYNSSSKYK LPRGINIVPK 180 ALSVNTSSVS SSKHAKRSKI DVSSICPIAT TLKIESNNEM VNAVVENKND VEEEENVNED 240 I |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2ayd_A | 1e-15 | 84 | 154 | 4 | 74 | WRKY transcription factor 1 |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015158586.1 | 6e-96 | PREDICTED: probable WRKY transcription factor 27 | ||||
TrEMBL | M1DN19 | 8e-93 | M1DN19_SOLTU; Uncharacterized protein | ||||
STRING | PGSC0003DMT400091626 | 1e-93 | (Solanum tuberosum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA3668 | 13 | 45 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G52830.1 | 1e-24 | WRKY DNA-binding protein 27 |